RnoINT0081836 @ rn6
Intron Retention
Gene
ENSRNOG00000023233 | LOC102546648
Description
uncharacterized LOC102546648 [Source:RGD Symbol;Acc:7541917]
Coordinates
chr1:99489149-99496209:+
Coord C1 exon
chr1:99489149-99489250
Coord A exon
chr1:99489251-99493846
Coord C2 exon
chr1:99493847-99496209
Length
4596 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATACTCTTTTCATCTCCCAGAAG
3' ss Score
8.04
Exon sequences
Seq C1 exon
GCTACCCTATTCCCAGCCCTGGGGCCATCTTCAGGATAAAGAAAAGAAAGAAGACACAGACAGGAGAGGCTAAGTTCCCACATCATCAGTGTTGGTGTCAAG
Seq A exon
GTGAGTGACCAGGACCTAGACGGAGGTGGATGTTATTAGTGGGCCACTACCAAACTTCTTCATTGATCCCTTCTCCTAGTGGTGGACATCAGGCTTGCCTCCTTCCCCCACTCTTTATAGCTAATGCCACAGTGCATTGTGAATGTAGGCCAGGATCGTGGGTACCAAGCTTTGCCTCCCACACCAACTCTCTACAGCTAACCCTGCAGTACTGTGTAACTGTGGACTAAGAGTGAGGATGAGCTTCTTCGGAGGTGAATAGTGGGTAGTCAGCTGCCTCATCGTGGAGATAACAAGACCTAAGTTGACCACCAACCCTATTCTCCTGGAGGTCGATACCTGGATTCCTGTTTGCACACCTCTCTTGTCTCCACTGGGCATTACCAAACTGTCAACAAGATGAAGAAAACTCAGTAGTGATTGAGAATACGGATACATGTGTTGGTCAGGGAGGAAATTGGTCTCCTTTTTCCCGATGACCATGGTTAGGGCTGAGGATGCATATCTCCGTGGTGGAGTGGCAGGCTGACATGTATCAAGCCTTGGATTCAGTCCCCAGTATGGCAGATGTATAGGTAGACAGACATATGTGTCAACGTGGGTAAGATACGCTAGTGAGATACAAAGTTTTCAGCACAGTTGGTGATGGTTCAGTTGGGTATTTTTAAGTTAGTTTCATCGTCACTTTCTTGTGATAGCTCTCATGCGTTTTCCTCTCCTGGCCCTTTCCCCAGTGACCTCCTCCAGCCCCCTCTTGTTGGACCCTGTCCATGCCACAAGCTCCACTACTCTTTTTCTTTCTTTCTTCCTCCTTTAAGATCCAATTTTTTGAAGTCCCTTTTCTCCTTTGACAATTTACATATAACACATGCAGACATAACCTATATATACACATACAGAAATTAAAATCTAGAGTCCACCTGTAAGAAAAGAATATGGTACTCTGTCTTTGAGTGTCACTTAATTCACCTAACATGTCAAGTCCGATCCATTTTGCTGCAGTTGTGAGGATTTTGTGTTTTGGGTGTTTTGTTTTGTTTTGTTTTTGTTGTGGCTAGCTAAAACCCTATGAGACATGTGTTCTACATTCTCTTACTGCTTTCATCTGTCAAGAGGCATCGGTTCCCTTTCTCACTGCAGCATAAGTACGGCTGTGCAAGTATGTCTGCCTACATCCATACAGAGTCCCTCAGGTATATGGGCTGGCTTGGTCTGGCTGGCTTGGTCTGGCTGGGTCATATGACAGTTCCATTTTGAGTTCTTTAAGGACCTTCCACCCTGGCTTTGGTGGCTACAGCAGTTGGCACACCCTGTAGTGGTGCACAGGGACATAGCTTTCCTTGCTGGCATTTGTTGTTTGTTTCTTTTCTTTTCTTAAAATAAAGGATTTAATAATTTACTTTATGTATGTGAGTACACCGTAGCTGTCTTCAGACACACCAGAAGAAGCCATCAGATATCATTACAGATGGTTGGGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCTGTTTCTTTTCTTAATAGCCATTTTGACTGGGGTGACCTAGAATGTGAGGGAAGTTTTAAATTGTGTTTCCCTGATGACTAAAAATATTGAACACATTTTTAAAATATGTATTGGCCATTCGTATGCCTTTTGAGAACTATCCATTAAATGTATTACCTATTGCTTGATTGGGGAATTCGGTATCTCTGCATAGTCTGTGTATTAATCTGTAGTTAGAAAAATCCTTTCCCGTTATATAGGCCACCTCTTCATTTCTTTTGCTGTGCATGTTTTTATATAACCCCACTTATCCATTCGTGAGATTGTTTTGTTTTTTTTTTCCCTGTGCTATTGAGTCTTTTTCTAAACTTCCTAGCCCATGCCTGTATCTCTGAGTCTTGCTTCTGCCTCCCTCCCGCAGTTTCAGAACGTCATTACTAAGTCTTTCAGTCTAAGTTGTTTGTCGGGGGTAAAGAGACTTACTGCTCTCCACAGCGCCCAGGCTTGGTTCCCAGTACCTGTGAGGCAGCTCACAGCTGTCTACAGTTCCAGGCCTAGGGAACGCGACTTCCTCTTCTGATCCCCCCCCAGGCACTATCAGCAAACACCCATACATGAGATGAAGTAAATACATCTTTTTTAAGAAAAAAGACAAAAAAGATGGGGATCCAGTTTCATTTTTTTACAGGTCGTCCCAGCACAGTTTGTTAAAGATGCTTCCTAATATATTCTTGAATGTGTTTTGAAATTTTTTCTTAAGATGTTTTGTGTCCATTTTCATTAAGGAAATTATTCTGTAGTTTCCGTTGTTTTTGTTGTTGTTGTTGTTGTTGTTGTTCTGTTGTGTCCTTACCCAGTTTGGGTGTTAGATACCAACATTAGCTTTGTACAGTGTGCCTTTTAGTGTTTCTCCCTTTCTACTTTATGGAAGGGTTAAGGAGTGTTGCCATTACCTGTTCCTTAAAGGTTTGGGCAGACCCCCCAGTGCATCTTCTCTTGGGCTTTTCTTCGTATGAATATACTTTACTCTGCCTCTTACGAATCTATTCTGTTTGTATCTTCTTGATGTAATTTCCTTGGGTGTTTTGTTTGTTTTATTGTTTTCTTTTGTTGTTGTCTTTCAAGACATGGACTCACCATGTAGCTCTATCTGTCCTGGAACTCACGCTGTAGACCAGGCTGGCTTTGAACTCAGAGATCCACCTGCCTCTGCGCCCCTAGTGCTGTGATCAAAGGCCTGTGCCACTGTACCCATCAAGATTTTAACTTTCATAGGTCATATGTGGTTAAAATTTTAATCATTTATTCTAACATTTCCAGGGTTTTTTTTTGGTTTGTTTTTTAATGTAAGATTTCCAGGTACTAACTCTCCAGTAAACTGCTAGATTTCTTTGGAATCCATTGTTAATATCCTCTTTTTCATTTCTAATTTTGTTAATGTGACTCTCTTTTCCCTGTCACATTGGCTAGGAGTTTTTCAATCTCACTTTTTTTTTTCTTTTTTTTCGGAGCTGAGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCGCTGAGCTAAATCCCCAGCGAGGTTTTTTTTTTGTTTGTTTGTTTGTTTGTTTTTTCTTCCATTTACTACTTTGGATTTTGCCTTTTTCTTCATTTTTTGAGAGTTGCAGCCTTAGGTTGAACTCTGATTTCTTTAATGTAAATATCTCAGATATCAACTTTCTCTTGGACCTGTCTTAGCTGTATCCAAAGATCATGGTAAATTGGCATTCCTCCCCATTTTGTTCCAGAAATGTTTTCATTTCCTCCCTGATTTCTTTGCAACTCACTGCTAATTCAGAATAGGCTGATCTACGTCCATGTATCTGTGCAGTTTCTGTGGTTTCTCTTCTTGTTTTATTTCTTTGTTTCTCTTTTTGTTTTATTCTATTATGGCCTTTTAAGATACGGAACATTGTTTCAGCTTTTTTGTACTGTTCAGATTTGCTGTGTAGCCTGGCATGTGTTCTGGTGTTTGAGAATCGTCCATGGGCTGCTGAGAAGGACTGTGTTCCATTTCCGTTGGCTGGGATATTCTGTAGATATCCCTTAGACATGTGTGATCGGTGTTGTAGATATTTCTTATTAGATCTCTCTCTGTCTCTGTCTCTCTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGAATAAATGCCACGTGTGTCAGAGTTTCCACAGAGTCCAGACGAGGATGTCGGATCCTCTGGGGTTGGAGTTAACAGGTTCCTGCGAGAGTGCTGGGAGCTAAACTCCAGCCCTCTGCCAAAGCAGCAAATGCTTTTAACTGCTCACATAGAGTTAAGATCAGAAAAGTAAGGGAAGGCCACTATATGTGTAAATGGATGTCTAAAAAAAGAAGGAAAATGTACTGGTGTTAGGTTACGGTTCAAAGATAAAGAGTGCTTTCCTAGATTAAGTAAACTTCCATCCCTAACAACAGTGAGTGACGTGAATATATGAGTCCTTAGCTAGATGAAAAAAATGGGCCAAAGGCATGAATATGCCTTTCTCTAGAACTGATTAAGTCCACTGCTCTGCTGGTCTCTGTTCCTTTTTAACACATGATCGTCCAGCGAGACTGCCTTATAGCAGCTTTCACAGTTTCTTCCCCTACGCCTCAGCCTACTAGGTTTCCTACGTCAGTCAAATTCATTGCCTTTGTCTAAACAGTCTTCTCCGCAGACTAGTACAGCCATCGTGACCACTGACCTAGGCATTCACATTTCTTCATCTGAAAAACAGGGAAAATAGTTGTAATTGCTTTATGAGATGGTTTGTGGGGTAAAATGAGTCATAAAGAAAGATGCCTGATGGTTAGTGTCCCACAGCTAAAGTTCGACATGTCCTAGGGATGTAGGCATGTTCTGCTTGTTGGCATGAGTACCTCACAGAGGTTTTTTTGTGCTTGTTGTCTGTTAACTCTGTGATTTCTCACCCATCCTGTTCACTGTGCATACTCTTTTCATCTCCCAG
Seq C2 exon
AAGTGGAATCAGAGTTTTACACTCCCCGACAGAAAGCTTCCGAGAATGCAGCATTTCAAACCAGAAAGGCGAGTGCACTCTCAGGTCATGGTTTGTGGTGCTCTATTTTAGAAGTACTGTGGCAAGACCCCGACCTTACAAAAAGAGATGGACAAAGCCAGATCCCACCCTGGAGTCCTGGTGCTTTCCTCAACAAGAAAACACAGAACACAGACAGAGACTGTGGTTGTAAAGAGCCCGGAAAAACCACCCCCTTGGTATCTAACCTTATTTCTACACAAAAGGGAGCTCCAAAGTCACTTGCGAAACATTTGAAGCGCAACCTTGAAGCAAATGGTGAAGAACAAGGCAACGTCACAAAGCAGCTTAATGACATTGTTACGTTGGGTCGACTCTGCACGCAAGACACTAACTGTACAGTTCCTCACGAAGGGCCGTGCGAAGGTGACCAGTGCAGAAAAGTTCCCATCCACAAACAACCACTTGCAGAGAAAGAAGTCCATTCTCACGAGAAGCCAGATGAAGGCACGGGACGTGGAAGGACCGACGATGCGTCTGCTTTCTGTCAACATCAGACAGCTCACACCGGAGAAGGACCTCTTGTCTGTCACAAGTGTGAGGAAGTCTTCCTCCAGAAGACAGAGTTTGCCTCCCATCAAGAAACTCACCCAGAGAAACCTTATGAGTGTCCCGACTGTGGGAAATCATTTAGCCGAACATCCAACCTGCAGGTCCATCATCGAATTCACACTGGAGAGAAACCTTACGAATGCCGGGACTGTGGCAAATCATTCAACAACACTTCCCAGCTGAAGGTACATTATCGAATACACACAGGGGAGAGACCTTACGTGTGTCCCGTGTGTGGGAAGGCCTTCAAGCAGAAATCAATCCTCAGCACCCATGAGACGATTCACACTGGGGAGAAGCCTTACAAATGTACCGTTTGTGGGAAACTGTTCAGCTGTACGTCCCGACTGAAGGTGCATTATCAGATTCATATGAAGGAGAAGCCTTACGAATGTGGTGACTGCGGGAAGGCCTTCAAGCGAAAGTCAAGCCTCACCGTTCACCAGAAGATCCACAGCAGACAAACACGCCATGCGTGCAGCGAGTGCGGGAAAGAGTTCAGCCAGAAGTCAGAGCTCAGCACGCACCAGAGACTTCACCTGGGGAAGAATTCTCACAAATGCGCCGACTGCGGGAAGGCGTTTACTTACGCATCCCAACTGAAGATGCACCATCGAGTTCACACGGGGGAGAAGCCCTACAAGTGCCGGGACTGTGGCAAGTCCTTTACGTACTCATTCACCCTGAATGTGCATCGCCGGATTCACAAGGTGGAGAAGCCTCACAAGTGCAGCGTCTGCGGGAAAGCCTTGGCTTCTAAGTACCAGCTGGAAGAACATGAGCGGATCCACACAGGGGAGAAGCCTTACGTATGTACTGAATGTGGAAAAGGCTTCCATGGTAGGTCAGGTTTCCTACGGCATCAGATAACTCACACTAGGGATAAACCTTTTGTCTGTCATAAATGTGGGAAGGCCTTCTTTCAGAGGTCACAGTTGACATCTCATCAGCAAACTCACACGGGAGAGAAGCCATATCCGTGTCGTTACTGTGGGAAATCATTCAGCCACACATCCCAGCTGACAGTCCATCATCGAATCCACACTGGGGAGAGACCTTACAAATGCAACTACTGTGGGAAGTCGTTCAGTAATTCCTCCCAACTGAAAGAGCATCTACGAATTCATACTGGGGAGACACCTTACGCATGTTCCGAATGTGGGAAGGCCTTCAGCCGAAGATCATCCCTCAATTTACACACGAAAATTCACACTGGAGAAAAACACCATATTTGTAGCGAGTGTGGGAAAGCCTTCAGTCAGAAGTCAGTACTGCGAACACATCAGAGAATACACACTGGGGAAAAGCCTTACAAATGCGGTGACTGTGGGAAAGCCCTAGCTTCAAAGGGCCAGCTTCGAGATCATCAGCGGATTCACACGGGCGAGAAGCCCTATGTGTGCCCCGAATGTGGGAAGGGCTTCTTCGGCAGGTCGTCTTTGCACAGACATCAGATGACTCACACTAAGGAGAGACCTTTTGTCTGTCAAAAATGTGGGAAGACCTTCATCCAGAAGTCAGCACTGACATCCCATCAGCAAATTCACACAGGCGAGAAACCCTACGTGTGCCCCGAGTGTGGGAAGGGCTTCTACAATAAGTCGTCTTTACCTCGACATCAGATGACTCACACGAAGGGGAGATCTTTTGTCTGTCAAAAATGTGGGAAGGCCTTCCTCCAGAAGTCTGTGTTGAAATGCCATCAGCGGACCCACACTTGCAAGAAGCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023233:ENSRNOT00000074820:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.192
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF0009621=zf-C2H2=WD(100=2.9),PF0009621=zf-C2H2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.3),PF097235=Zn-ribbon_8=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF0184418=HNH=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF0009621=zf-C2H2=WD(100=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]