BtaINT0164957 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040603 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]
Coordinates
chr18:57904707-57910762:+
Coord C1 exon
chr18:57904707-57904802
Coord A exon
chr18:57904803-57908948
Coord C2 exon
chr18:57908949-57910762
Length
4146 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCATCTTGTTCTCCTTCTAGAAG
3' ss Score
9.56
Exon sequences
Seq C1 exon
GGTATCACATTCCCAACCCAGAGATCATTTTCAGGATTGAAGAAGGAAAGGAACCATGGGTGAGGAAGACTGAACTCCCATGTCAGAGGTATCATG
Seq A exon
GTGAGTGACTGTCAAGTCGTGTAGATCCATGAGGGGCCATATTCAACCTACCACACTTATCCATTCCCCAATGGTGGACACACGTTATCTCCTACTCCTTAAAACTAATGCTGCTATACATTATTTTGTAATATATGCCATTAAGGCTAATGCTGCCATACATTATTTTGTAAATGTTCTATAGGGGCCAACATAAGAATTAATCAGAGGTGAATAGTCAAGGGGGATTGCCTGATCACTGGATATGACTACACTTAATCCAGCTAAGTTAATCATTTTTACATCTTGCTTCCCAACATATATAATATTTATCAAATTTCTCATTTATGGCCCATGTTATGATAGAGCTGTTTTCATTTTTCTGGGAACAGAGCATCTCATCATATCTGTTATCTGATTGGATTTTCCATCTGTATGTTGCTTTTGTCGTCTCATTTTATCCCTTTGTGGAATTTCCTGAAGGCCTTTTTTTAAATTTGTCCTCTGAACTCATTTTTTTTCTGCACTGAATCCTTCTTTATTCCTAATTGTGGTGCCTCCAACTTGGGCCCCTGTACTTCCCTCTGGCTATCCCTTCATAGAGGAATTACTTTAAAGGACCCTTCTATTCTCAACACTTAAGGCCTAATTTTTTTTTTTTCCTGATGATCCTTTATCAGTGCCTCCAGTCCCCATGCCTAAACCATGTTCTCTTATTTAGCTTTATGGTGGACAGTTCCTGTGGGGTGTCTCATTTCCTTTAAGGAAATCAGAAATTGGAATCATTATGCACATCAGAAATTCTTCTCACTTTATACGTTTTGTCCAAAAGATTCTTCTGTTTCTTGGCTCTCCCATCTTAGTCTTCTAACTTGTTATTTTAGAAATTCTACTATATATATATATATATTTTAAAAGACAATTTAGTTGACTCTTTTTCTTAATTCCAGGGGTATCACCATAAACCACGTATTTTCTCATGCTTGGGTTATTTTGTTCCTAATGGGATTTGTGGATTCCCAGTCATCATGAGTTCAGTCAAGATGACATTGATAGATTACCCCAAAGATTGATTTATTTCTTTTTCTCAGATTTTAATGCTATCAGTTCAGTTCAGTCACTCAGTTGTGTCTGACTCTCTGCGACTACATGAATCGCAGCACACCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAGACTCACGTCCATCGAGTTAGTGATGCCATCCAGCCATCTCATCCTCTGTCATCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAGTTCTTCGGTGCTCAGCTTTCTTCTTCTGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGCGGAGCTGGTAGGCTGCAGTCCGTGGGGTTGCTGGGCCCGGAAGGAGGCCGTCTGTGGGGTCACACAGAGTCGGACACGACTGAAACGACTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGTTTTGACTAGATGGACCTTTGTTGGTAAAGTAATGTCTCTGCTTTTCAATACGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGTGTCTTTTAATTTCATGGCTGCAGTCACTATCTGCAGGGATTTTGGAGCCCAAAAGAATAAAGTCTGACACTGTTTTCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTCATTTTCTGAATGTTGAGTTTTAAGCCAACTTTTTCACTTTCCTCTTTCACCTTCATCAAGAGGCTTTTGAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCAGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCATTTCTCATGATGTACTCTGCATATAAGTTAATGCTATATATATATACACACACACATACACATACATACCTACTAAAAATGGTAAAAATAAAGCGCATTCTCATTTTTTAAAAAAAGTGATAGATGACTGAGGTTTGGGAACAGGACAAGGGTCTGGGATAGTTTATCCAAGTGATTGAAAGAGAAAAGAAAACAAGACGTGACGGTCTTAACCATACTCAGTATTTAAATCTCTGATAGGATAAAGTAATAGTAAAATTCAGCCACCTTTTTAAAAAGAATCTGTTATGTCTTATGTTCTTACTAGTAAACTGGATGATCAGTGACTCCTGTTCTTAACCAAAAAATGGTATATTGAGTAGCATAAAGCTGAAAGTTATAACAAAGAGACCAAGGTCCAGTAGAATAATTTCCAGAATAATTCTCCTCCTATAAAACACTTCTGAAAGTCAGTTCAGCAGGAAGCCTTATGTTTTGTATTCATTCAGGTGTTGAAATTTTTCTCTTGTCATTGCAGTACCATCTTTTATGATGCTGTCAATCTTTGGGAATGAGTGCATTGCAACCAAAGCCAGGTTCTATTAGGCAGAAAAGGGATGGAGGGTACTGAGAAACTGTGATGTGTTTCTCTGGCTAGAAGTGGTGCATAATGTTGTATGCCCATTTCGTCAGCAAAAACAGTCTCACTGTCACATACCACTGCAAAGGAAATTGTGAGTCATTATGTGGCTTGGCTGCCATGTGCCTGGCCATAGTTAACCTCTGTGGAAGAGGGTGAGACAGCCTCTAGGGGACAGCCTGTTTGTCCAGTCTTCCAGTTTACCCTTCTTGGGATATGTACTAAGTTCAGGGAAACAAACTTTAGTTTCATAGAATTGAGAGTTTGAGTATAGGTATTCTTTCACTGCTTGGCTATGTCAGGATTGATGCTTTAATAGTCTATCAGAGGATATCTAGGGCTGAATGATTTTGGTATTGTTTCTAACAAGTAGGAGGAAGCTGGGAGATTAATCACAATGTAGATCTTTAATGAAAACCTATACAGATGGTCCCTGACTTGTGATGGTTCAATTTACAATTTTTCAACTTTACAATGTTGTGAAAGTCATACACATTTAGTACAAACTATACTTTGAATTGTAAATTTTGATCTTTTCCCAGGCTAGTGATATATAGTACTATACTCTCATGATGCCAGGCTCCCAGTCAGCCACATGATCATAAGGGGAATCAACCAATACACTTACTACCCTTCTGTACCCAGATAACCACTCTTTTTTTCACTTTCAGTACAGAATTCGATAAATTGCATGAGATATTCAACACTTTATTATAAAATAGGTCTTTTGTTAGCTGCTTTGGCCCAACCTTAGGCTAACATAAGTCTTCTAAGCACATTTAAAGTAGGCTGGGTTAAGCTTTGTTTAGTAGGTTAGGTGTATTCAACTCATTTCTGATTTATGATATTTTAAACTTATCATGGACATATCAGGACATAACCTCATTGTAAGTTGAGAAAACTCTGCACTCTGAACCCCTCCTTCAAGCTTTGGCTGTGCACAGATGCTGCCCTATGACACTCTTGTCTCTTTTATCCTGTAGTCATTGCACTAGGTCTGGGTATCTAGATCACCTGCATGAGTGGGGTCAGGTTGCCTTTGTTAAAGTCTTAACTTTCCCCACGGCTGGGCAAAGTGATTTTGGTTAATTATTTAACCATTGTACTTCCTTTGTTTCATGTGGAAAACCAGGATAATAAATAGTTACTTCCTGGGATTGTTGTGGGGATTGAATGAATTTATGTGTGCATCACATAGAACATTGCCTAGCAAATGCTAAGTGCTATACAGCTAAGTGGCTGACATATAGTAAGGGCTGTGTGACTTCTCTCTTGATCACCATCAGCATGACCATTGGTATATGACTCAGCAGTTTCTCCATGCACAATCTCAGTCAGCTCCATGTGACTTCTCCTCTATCCTTTGCTAATTGTTCACTGTATCTATTTCATCTTGTTCTCCTTCTAG
Seq C2 exon
AAGGGGAGTTTGGGCTTGAAACCCCACAACGGGAAATTTCTGAAGAAGCTTCATTTCACAATGAGATGATGGGTGGAGTCACAAGAGATGGTTCATGGTGTTCCATTTTAGAAGAACTGTGGAAACAAGCTGACCAAACAGAGAGGGATCCTAAAAATCAAAATAAACCTTCACATCAGGGGGCTTTCTTCAATAAGAAAACACTGAACACAGAGAGGGACTGTGACTACAAGTACCCTGGAACAGTCATTCAGGCAAAGCCCCACCTTGTTTCTTCACAAAAGGGACCTCATAAACGTTGCTCAGTTGCAAAAAGGTTGAAGCCTAACCTAGAAGCAACTCATCAAAATCAAAGCAGTATCACAAAACACCTTGATGATATGGTTGGATCTGGTCAGCCAGTTATCCATAGCTCTTCCAGTGCCAGCTGCAAGAATACTCACACAGGAGAGAACTTCCATGAAGGTAATACATGTACAAAAGCCTTCAGCCAGAAACAGTTACTCACACAGCATCAAGTTCATGCTCAGGAAAAACCAGATAAGTGTACTGAATGTGGGAGGGACTTGACCCACAAGTCACACCTCCTTGAGCAACAGAGATTCCATAGTGTAGAAAACCTCCAGGAATGTGGTAAATGTGGGAAAGCCTTCACCTCACAACCAAAACTCGGGGTCTGTGTGACAGATCATACAGGTAACATACCGTATATATGTAAGGAATGTGGAAAAGTCTTCATTCAGAGGCCAGAATTGGTTACACACCAGAAAACTCATACTAGAAAGAAGCCCCATAAATGCCATGAATGTGGAAAAACTTTCTTCCAGATGTTATCTCTCTTCAGACATCAGAGAACTCATACAAGAGAAAGACTCTATGAATGCGGTGAATGTGGGAAAGGCTTCTCCCAGAATTCAACTCTCAGTATACATCAGAAAATCCACACTGGCGAGCGACAGTATGTATGCAGTGAATGTGGGAAGGCCTTCACCCAGAAGTCAACACTCAGCTTGCACCAGAGAATCCATTCAGGGGAGAAGTCTTATGTGTGTATTGAATGCGGCCAGGCCTTTATCCAGAAGGCGCACCTGATTGTACATCAGAGAAGTCACACTGGAGAGAAGCCTTATCAGTGTCACAGCTGTGGGAAATCCTTCATTTCCAAGTCACAACTTGATATACATCATCGAATCCACACTGGGGAGAAACCTTATGAATGCAGTGACTGTGGGAAGACCTTTACCCAAAAGTCACACCTCAACATACACCAGAAAATTCACACTGGAGAAAGACACTACGTGTGCAGTGAATGTGGGAAGGCCTTCAACCAGAAGTCAATCCTCAGCATGCATCAGCGAATTCACACCGGAGAGAAGCCTTACAAATGCAGTGACTGTGGGAAGGCCTTTACTTCCAAGTCACAGTTCAGAGAGCATCAGCGGATCCATACGGGAGAGAAACCCTACGTATGTGCTGCATGTGGGAAGGCTTTCAATGGTAGATCAAATTTCCATAAACATCAGATGACTCACAATAGAGAGAGAACCTTTGCCTGTTACAAGTGTGGGAACACCTTCGTTGAGAAATCAGAGTTAATCACACATCAGAGAACACATATTGGAGAGAAACCTTATGAATGCTGTGACTGCGGGAAATCCTTCAGTAGGAAACCACAACTCAAAGTGCATCAACGAATTCACACAGGAGAGAGACCTTATGTGTGTTCCAAGTGTGGGAAGAGTTTCAACAACAGGTCAAATTTTAATAAACACCAGACAACTCACACCAGAGATAAATCTTATAAAAGCAGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040603:ENSBTAT00000052898:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=NA C2=0.248
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.6),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development