HsaINT0186305 @ hg19
Intron Retention
Gene
ENSG00000105497 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:12964]
Coordinates
chr19:52085040-52092991:+
Coord C1 exon
chr19:52085040-52085135
Coord A exon
chr19:52085136-52089879
Coord C2 exon
chr19:52089880-52092991
Length
4744 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTTCTCTTTCTCCTTTTAGAAA
3' ss Score
12.17
Exon sequences
Seq C1 exon
GGTATCACATTCCCAACCCAGAGGTCATCTTCAGAATGCTAAAAGAAAAGGAGCCGCGTGTGGAGGAGGCTGAAGTCTCACATCAGAGGTGTCAAG
Seq A exon
GTGAGTAAGTTGTACCCGGGCAAATGTAGATATCTTTGCAGGGAACCATTACCAGTCTACCATACTTTTCTATTCCCTCCATTCCCCCAGTGATGGCCCGTAGATTGCCTCCTACTCCCAGTTTCCCATCAAACACTGTAAATGTGCTATAAATGTTAAATGTCCTATAGGGGCTGCCTTAAGAATTTTCCATTGGTGAATACTCAGGAATGGGATTGCCTGGTCCTGGAGATAAGTATACTTGACTAAATCAACCATATTGCTCTTCTGATGGGCTGCACCAGTTCACACTCCCCATGTGCAGTGCACAAGGATTTGCATTTGCACATCTTGCTTGCTAACACTTGGCATTAACAAAATTGGTGAATTTATAGCCCTACTGATAGGTGAAAGGGCTGTTTCATTTTTTTTTGTTTTTGGTTTTGGTTTTTTTGAGACAGAGTCTCACTCTGTCACCTAGGCTAGGGTGCAGTGGCACGATCTTGGCTTACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCACACTCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCCTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGAATTATAGGCGTGAGCCACCGCACCCAGCCTGTTTCATTGCTTAAGTGTTATTTTTCTAATAACTGAATGGTGAGAGCCTCTCATCTTATCTGTTATCTGATTGGCTTTTTCATTTGTTTGTTGCATTTTCTTACCGCTTATCTCTTTACGTCCATGGAGTTTTCTGCCTTTTTTTTCCAGTTTTTTTGCCCCTAATTTTATTTATTTTCTTTTCTTTGCTGGATCTGCTGTCTTCTTTTCCTCCCAGTTGTGGCACCTCTAGCTTGGGGCCCTGTTCTTCCATATGGGCATCTTTTCTTTTTTTTGAGGCAGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTTGGCTCACCGCAACCTCCGCCTCCCAGGTTTGAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGTGATTACAGGCATGCACCACCATGCCCGGCTAATTTTGTATTTCTAGTAGAGACGGGGTTTCTCCTTGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGTTCCGCCTGGCTTGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACCGTGCCCGGCTATGGGCATCTTTTCCCACAGGAATTGACTTAAAGGACCCATCCATTCTGAACTCTTAGTCCTCATATTTTTATTCTAATGATTTATATATCAGTACCTCTAGTCCCTGTGCTTAAACTGTGTTCTGCTACCTTACTTAGCTCCACGGAGGACAGTTCCCATGAGATGACTCACTTCCTTAATTTTGGGAGATCAGAAATTGGAATCATCATCATCCAAATAAGGAATTCTCACCTGATAAATTTTGTGAGATTTTTCTGTTTCTGGGCTCAGAAACACAGTCCTCTAATTTAATTTATTACTTTGGAATTCTTACCAGTTTTTCTTGTTTTAATTAAGAAAAAAGTGACCCTTTTTCTTAATCCCAGTGGTATTACAACAAACTAGATCCCCATTTTCTCATATTTAGACAATTTTGTTCCCAGTGAGATATGTTGATTTCAGGTTTTTGAGTTTAGTCAAGATACTGACAGATTTTATGACCCCAAACATGGCTATTTTGTTTCTTTTTTCCTCAGTAGATATGATAAAAACAGGCAGTTCTATTTCCTACTGTGTAGGATTAACAAATTCTTTTCAGTGATATTGTCCTCATGGCCACATATTTCCAATTTAAAAATATACCTGAATAGTTTTCATCACTCATGCTCTGCTCCATTGTTTTTGTATGTTGTTTAATGTCTACTCCATAGAATGATTCACTTTGCATACACTCTGCTGATTACTTTGTACTTTCTTAATCTTCATTATATCAATGTTTAGCATGAGGAAACCATTGTATTTAAGATATAGGATTAGGATTTTTGTATTTAGGATACAGAAATTACTGATTTTCTGAAAATGGGCAGAAAAGAATATTTCACAGTATTTTAAAAGGATGCTTTAAATATTTGCTGAGATAAATTCAAAAGAACGGAGATTGTATTTGGATGGAGAGGACAATGGCATTAAATGTTAAAAGTATTAGCCTTTGTGCATCAATCATGTCTATTTCATGGAAGGCTACTCAAAAAGTAAGTGTATCAACATGGGAAGCATGGATAGCAAATGCTGGTGAAGTTCAGAAAAATGATGTCAGCCTAGAGGTGGAGTGACATTGGGAATTAATTTTAAGGGCATAGTACCTATAACTGGTTCAAGAAGCCATTTTGAATTGAAACAAAGAAGCAGATGAAGCAAGCTTAATGGGAATAGAGGACATGAGAGTGTGCTTGGATTTGAGAATAAATTGGACTTCTTTTTTGCAATCGACATTGTTAGGCTGTGTTGGAGAGTTGTGGAAAAGCTTTTCAGTACAGTTCTGATAGTTTACATTGAACATTTTGGGCAGTAATTTAAGTGTTACCAGGTTCAGCAAGATTTTTATGACCTGAATAAAGTGAGAAGTTAAAAATGTTTCAGATCGCTGCCTGGGGACACAGTGGAAGATTGCCAGAATAAATGACCACCTGTATATGGGTAAAATTGCTATTTAAGAGTGAAAAATGAAATAGAAAACAACCTATTTTAATAAGTGGGAAAAGGATGTGAATAGACATGTCTTCAAAGATGATATACAAGTGGCCAATAATAGGAAAAAATGCTCAACTTCACTAATTATGTGGGAAATGCAAATCAAAACCACTGGGTGATATCCCTTTACATCCATTAGAATGGCTACAATTAAAAAAACAGAATAACAAGTGTTGGCAAGGATATAGAGAAACTGGAATCCTTGTGTATTACTAGTGGGAATGTAAAATGGTGTAGTCCTATGGAAAACAGGATGATGATTTCTCAAAAATTAAACATAAAATTACCATATGATCCAGCAACTCCACTTCTGGGTAGATACCCACAAGAATTGAAAGCAAGGACCCAAACAGCTGTTTGTACACTCTTGTTCATAGCAGCACTATTCACAATATCCAAAAAGTGGAATTGTCCATTGACCAATGAATTGGTAAACAAAATGTGGTCTATACATACAATGAAATATTATTCAGCCTTAAAAAGGAAGAGGAATTATGAAACATGTTGCAGTGCGGATGAATCTTATCATGATGCTAAGTGAATAAGCCAGACACAAAAAATCCAAATGTATCATTCTACCTGTATGAGGTACTTTAAGTAGTCAATTCATAGAGACAGAATAAGATTGTGGCTGCCAGAGAATGAGGGATGGGGGAAAAGGGAAATTGTTTAATGGATACAGCATTTCAGTTTTGCAAGATGTAAAAGTTTTGGAGATCCATTGCACAACAGGGTGAATACAGGTAGCACTACTGAACTGTACAATACAAAATGGGCAAGATGGTAAATGTAATATTATGCACTTTTGCTACAATAAGAAAAAGTTAACAATAAAGATTAAAAGTGTCCTTTTTTTAAAAAAAGAATGAAAGATGATTGAGTTTTTTTGATAGGACAAGAGTCTGGGATACAGTTTAAGTGACTGAAAGCGAAAAGAAACTACATGTGATGTTCATACTCAGTATTAAAATCTGGTAGAAAAAGTAATAGTAAAATTTAGTAACTATTATTTTTATTGAGAACCTGCTGTGTTTTGTGCAGTATACTAGTAAAGTGCACAGGATGATCAGGGACTCTTATTCTTGGCAAAAAAACAAAACAAAACAAAAAACTAAACTAAAAAAGGCATATTTGATAGCATAAAGCCAAAAGTTCTAACAAAGAACAATTAATTTCAATGGAACAAGGGTGAAACAAATTCTGGGGAACAGCTTGCTTGTCCAGTCTTTTAGAATATATTTCTGGGGATATGGGTATATTCCTAAGTTCAAGAAAAAAAAATTGTAGCTTCATGGAGAGTTGAGGCATAGGAGAGTTGAGGCATAGTCATTCTTTCACTGGTTGGCCATGTCAAGATAGGTGAAGCTTTAATAGTTTTCAGAAGGATATACAGGGCTGATGGACTTGGCATTGTTTCTAACAAGTAAGATAAAGCAGGCAGATTGGTGAGGATTCATCTCTGAAAGTTAATGAAGACCTACACACTGAGCCCCCTCCTTCAAGCCTTGGCTGCCCACACATGTTGCCCTGCAACACTTGTCTGTTTTATCCTACTCATCCTACTAGATCTGGGTGTCTAGACCACTTGCATAAGTGTCCTCAGGTTGTTGAAATCTAATCCCCACAGATTAGCAAAGTGATCTTGGCCAATTACATAACCATTATGTGCTTCCTTTTCTTTGTAAAACAGGAACACCCATCATCGCTACCTCCTGAGGTTATTATGCAGATTAAATGAGTATGTGTGCACCATGTAGGCCACTGCCTGGCACATGCTAAGTGCTATGTAGATAAATGCTCATCATGTAATAAGGGCTCTGTGTTTCTGCTCATTGTCAGCATCATTAGCAGCATTATTACATGACTCAGCAATTTCCTTGTGTTCTGTGTCAATCAGCTTCATGCAGTTTCTCCTCTTTCTTGTTCATTGTGTCTATTTCATCTTCTCTTTCTCCTTTTAG
Seq C2 exon
AAAGGGAGTTTGGGCTTGAAATCCCACAAAAGGAGATTTCTAAGAAAGCTTCATTTCAAAAGGATATGGTAGGTGAGTTCACAAGAGATGGTTCATGGTGTTCCATTTTAGAAGAACTGAGGCTGGATGCTGACCGCACAAAGAAAGATGAGCAAAATCAAATTCAACCCATGAGTCACAGTGCTTTCTTCAACAAGAAAACATTGAACACAGAAAGCAATTGTGAATATAAGGACCCTGGGAAAATGATTCGCACGAGGCCCCACCTTGCTTCTTCACAGAAACAACCTCAGAAATGTTGCTTATTTACAGAAAGTTTGAAGCTGAACCTAGAAGTGAACGGTCAGAATGAAAGCAATGACACAGAACAGCTTGATGACGTTGTTGGGTCTGGTCAGCTATTCAGCCATAGCTCTTCTGATGCCTGCAGCAAGAATATTCATACAGGAGAGACATTTTGCAAAGGTAACCAGTGTAGAAAAGTCTGTGGCCATAAACAGTCACTCAAGCAACATCAAATTCATACTCAGAAGAAACCAGATGGATGTTCTGAATGTGGGGGGAGCTTCACCCAGAAGTCACACCTCTTTGCCCAACAGAGAATTCATAGTGTAGGAAACCTCCATGAATGTGGCAAATGTGGAAAAGCCTTCATGCCACAACTAAAACTCAGTGTATATCTGACAGATCATACAGGTGATATACCCTGTATATGCAAGGAATGTGGGAAGGTCTTTATTCAGAGATCAGAATTGCTTACGCACCAGAAAACACACACTAGAAAGAAGCCCTATAAATGCCATGACTGTGGAAAAGCCTTTTTCCAGATGTTATCTCTCTTCAGACATCAGAGAACTCACAGTAGAGAAAAACTCTATGAATGCAGTGAATGTGGCAAAGGCTTCTCCCAAAACTCAACCCTCATTATACATCAGAAAATTCATACTGGTGAGAGACAGTATGCATGCAGTGAATGTGGGAAAGCCTTTACCCAGAAGTCAACACTCAGCTTGCACCAGAGAATCCACTCAGGGCAGAAGTCCTATGTGTGTATCGAATGCGGGCAGGCCTTCATCCAGAAGGCACACCTGATTGTCCATCAAAGAAGCCACACAGGAGAAAAACCTTATCAGTGCCACAACTGTGGGAAATCCTTCATTTCCAAGTCACAGCTTGATATACATCATCGAATTCATACAGGGGAGAAACCTTATGAATGCAGTGACTGTGGAAAAACCTTCACCCAAAAGTCACACCTGAATATACACCAGAAAATTCATACTGGAGAAAGACACCATGTATGCAGTGAATGCGGGAAAGCCTTCAACCAGAAGTCAATACTCAGCATGCATCAGAGAATTCACACCGGAGAGAAGCCTTACAAATGCAGTGAATGTGGGAAAGCCTTCACTTCTAAGTCTCAATTCAAAGAGCATCAGCGAATTCACACGGGTGAGAAACCCTATGTGTGCACTGAATGTGGGAAGGCCTTCAACGGCAGGTCAAATTTCCATAAACATCAAATAACTCACACTAGAGAGAGGCCTTTTGTCTGTTACAAATGTGGGAAGGCTTTTGTCCAGAAATCAGAGTTGATTACCCATCAAAGAACTCACATGGGAGAGAAACCCTATGAATGCCTTGACTGTGGGAAATCGTTCAGTAAGAAACCACAACTCAAGGTGCATCAGCGAATTCACACGGGAGAAAGACCTTATGTGTGTTCTGAATGTGGAAAGGCCTTCAACAACAGGTCAAACTTCAATAAACACCAAACAACTCATACCAGAGACAAATCTTACAAATGCAGTTATTCTGTGAAAGGCTTTACCAAGCAATGAATTCCTAGTGCATCAGCATATTCATAAATGAAATATACTCCGAGTTTCTTGAAGAAGAGAAAATCTTCTCAGAATCAGGTCTAATTATATGTTATTGAATTCATGCTTCAGAAAAACTCTAGGGATGCACTGCATGTGTGAACACATGATAAAAAAGTCATGCTTTATTTTAGTGAGGGCAATTACAGAGAAAAGAGTAAGCAGAAATGTCCTTCTGAGTACTGGCCTCATTAAGGATTATAAATTTTCTCCCCGGGAAGAAACCCTGACTAACGCATTGAGAAAAGCCTTTCTGTAAAGAATGGTACAAGACAGGTTGTTACTCGATTATTTATAGTAAAATATGTGGGAAATTATATCAATGATAACCCTGTTTATTGTGGGATATCAATATTTTTAAAGTGCCAACACAGTCATGATAGGACAATATTTTATGTGTGTGTGTGCGCCTTATGTATATAAGCATATATATAATATATAAGCATATTATTATATACAGGTTGAGTATCCCTTCTCCAAAATGCCTGGGATCAGAAGCATTTTGGATTTCAGATACTTACAGATTTTGGAATATTTGCATTATATTTATTGGTTGAGCATCCCTAATCTGAAAATCCAAGATTAAATGCTCCAATTAGCATTTCCTTTGAGCGTCATGTTAGAGTTCAAAAAGTTTCAGATTTTGGGTTTTCAGATTAGGAATACCCAACCTGTATGTACGTATATTTCTGTATCTATGTATGTATATATATGCATATGCAGACATATGTATATGGTCTGGTCAGCATATGTGTATGTATGCGTATGTATGTATGTATGTATGCCCTCAGTGCAGTGGGGTTTGCTGCAGAATTCACTGCATAGCAGGAGATGTAAGCAGATGAGTTATTTTTTAAGAGAATCTAATCTAATTGTTTTTATAAAAATTATTCCCTATTGAATATTTATATAATGAGGTTGTATCAACAATGATTAACTCCTTTATTATACATACACATGAATGTGCATTTTTGGTAAATGCATAAATGAGATTCTATAATGTTTACTGATCTTTATATTACAGATTTTCTCTTCTTTTAGGATTAGCTCAGCTTGCCCCCCCTTTCCATCTCCACCATCTATAGTGAGCCTCTCCATAATTAGTGCCAACCATTAGTCTCGTTCATATTTTTACACCAGGAGTCAACAAACTGTGGCCATTGGCCAAATATGGCCTCCCAACTGTTTTTTTAAAATAAAGTTTTATTGGAACACAGCCATGTTCATTTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105497-ZNF175:NM_007147:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.126
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF097235=Zn-ribbon_8=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)