RnoINT0168670 @ rn6
Intron Retention
Gene
ENSRNOG00000030160 | Zfp819
Description
zinc finger protein 819 [Source:RGD Symbol;Acc:1309564]
Coordinates
chr1:99534114-99539227:+
Coord C1 exon
chr1:99534114-99534207
Coord A exon
chr1:99534208-99537394
Coord C2 exon
chr1:99537395-99539227
Length
3187 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CCTTCATCTCTTCTCAACAGGGC
3' ss Score
11.28
Exon sequences
Seq C1 exon
GGCTATCCCAGGCCAGAGGCCATCCTCCAGATGAAGAACAGAAAGGACACACGACTGGGGCAGGTTGATTTCCTACATCAGAGGTGTGGTCAAG
Seq A exon
GTGAGTGACTGTTACCAGGTAGAGGTAGATAGCTGAGAGGTGTGATCAGCCTACTGGCTTACTCATCCCCTCAGTAGTGCGCTCCTACATCGCCCCCACCCCCACTCCCAGTTTTCTTTTTTTCTTTTCTTTTTTTTTTTTTCCGGAGCTGGGGACCAAACCCAGGGCCTTGTGCTTGCTAGGCAAGCGCTCTACCACTAAGCTAAATCCCCAACCCCCCAGTTTTCATAGAAAGCACTGTACTACATTTTGTCAGGAGCGTGTACTAGGGACAGAAAGGTGGTTACTGGGGAATATCCATGCTGATGAACCTGCTGATGTTTACTTCTGATGGTCTGTACAAACTCTCAGGCCATGTTTGGAAATCATGAAACAAATCAAAAAGAGATTGCTGCTTGTACATCTTAATTGTCGATAGTTGACATTATCAACTTCGTTAATGTATTGCTTTTGTGCTTAGTAAAATAAATGTTTCCCTCTTATTTATTTTTGCTTCTTAGATTGCGTGCATGTGTGTGTGTTTTTCTCTGTGTGTGTGTTTGTCTGTCTCTGTGTGCTTGTGTCTGTCTCTGTGTGTCTTTGTGTGTGTGTGTCTGTGTGTATGTATGTGTTTCTGTGCCTGTGTGTGTTTGTCTGTCTGTGTGTGCATGTGTCTGTCTCTGTGTGTGTGTATGTCTGTGTGTATGTGTTTCTGTGCCTGTGGGTGTTTGTCTGTCTGTGTGTGCATGTGTCTGTCTCTGTGTGTGTGTATGTCTGTGTGTATGTGTTTCTGTGCCTGTGGGTGTTTGTCTGTCTGTGTGTGCATGTGTCTGTCTCTGTGTGTGTTTGTCTGTCTGTGTCTGTGTGCGTGTGTGTGTCTGTGTGTGTGTGTATTAGAAGAGGACCGAAGAGTGCTAGAGTTAGGTGACAGTACCCGTGTGGGGGGGAACTGAACCTGGGTCCTCTGCAGCAACAGCAGATACTCTTAAGCACCAAGCTCTCTCTAGGCTCTTCTGTGACATCGTCTCATAATTATTTAGAACCTCTCATTACTTGTTATGTAACGAGATTTTCTATGTATATATTATTTTTCGTATGTTTTATCATTTTGCGATCTTCTGAGTCTTTCACCCCATTTATTTATCTCTTCATTAAGTGTCCTTTTTCATCCTGAATCTTCTTTTGTGTCCCCCTAATTGTGGCACCACTGTATTCCTGTTTTATATGTTCCTGTATCATCGTCTCTTACTACCTTTATGTCTCTACTAATTTCTCTGGATAAGCACAGGACACTCACCCCTGTGGAGGTCTGAGAACAACGTGCAGAGTCAGTTCTCTAGAGGTCAAACTCAGGTCATCAGGCTTGATGGCAAGCACCTTTACCCATGAGCCATCTTGCGGGCCCAGCCATCTTTCTTATTACCTTTTAGACCCTTCTATTCAGATCTCTTGGCGAATTGTGTCAACTTGATACCACGTAGAACCATCTGGAAAGAGTCTTAATGAGGGATTGTCTTCATTAGGCGGGTCTGTGGGGAACTGTACTGATTGCCTTCGCTGATCTGGGAAGAGCCAGCTGTGTGGGCAGCTTTGTCCTGCAGCCAGGTCCCCGACTGTGCAGGAGTACAGAAGTCAAGCTAGCTGGAGAGATGCGTGTGCTCAGTCTTCCTCCTCTAGTCACTGCCCGTGATGTGACAGGTTGCCTCAGTTATCCTGGTTATCCCACCACCTTAAACTCCCTGAACTGATGGGACGCTAACCTAGAATGGTACTCTACGATAAGTCCTTTACCCGCTAAATTGCTTTTGGTTGGGGTGTTTTGTCACAGCAGCAGAAATGAAACCAGACAGGCTTTACATTCGAGTTTCGAATGTGCCTTTGTGTGTCCTGAGTGTTTAAGGAAAGGCTGTTTGAGATGCCGCCCTCAACAGGAGGACGTGGGGAGTGACTGCTCTTGGGGGCCATAGGAGGTAGCATAACCCTCAGTCTGAGGTGACATGGGAGTCGATTTTGAGGGCACTCCAAAATGGTTACCCCATAAAGTAATTTTGAATTGGAACAAAAGACCAAACCAAGCAAACTTAGTTGAGTTAGAGCAGTAGTTCTCAAGCTTCCTGATGCTGTGATCCCTTAATTCCTTATGTTGTAGCGACCCCCAACCATAAAAAATTTTTTCATGTAAATATTATGTGTATATGATATACAGAATATCTGATATATGACCCTTATGAAAGGATCATTTGATATCCCCAACCCCTGCAAGAGGTTGCCACCCACACAGGTTGGGAACCACTGAGTTAGAGGATACGAGTAAATGCTTAGAGTTACGAGTAATTGACCACTTTTATATTGGTGGTGTTGAGCTATATTGGAGTTATGTGTATGAGTGTTTTGCCTCATGGATGCCTGTGTACCCCACGTGTGCCTGGTGCTTAGATAGCCATAGAGAGTGTTGAGTCCCCTGGAGCTGGAGTTACAGATGGTTGTGAGTGGTCATGTGGGTGCTGGGAATCTCAAAGCACAAGATCGAAAGTGATTGAAGATGATGCCCAACCTTTGGCCTCCTAAACAGATGTACATATGTGAACACAGTCACAAATACATTAAGTAGATAAATAAGATATAAAGAAAATTAAAACTCGAGAGTGTAAAGATTAGGAGCAGAGGCTTGTGGAGCGTGGGTGAAGTCTATAGATAATCCTTACAAAGGGAAAGAAAGAATAGTACAGCAACAGCACGCGTGAGAAAACGGCCTACATCCTTCTCTTTTGACTTTGGCTGCCATTGACTGTGCCCAGTGATAGCCATGTCTGTTTTCTCCCTTACTTGTTTGTCCTTCTGTATTCATAGCACTAGACCTCTTGCATAAATTGGTTATCTTTCACCAAACCCAATTTCCCAACAAATTGTGTAAGCGATCTTGGCTACTCTGACGGAGGCTTCTGTTTCCTCATGAGGAAAGCAAGGTGTCTGGGTGTAGGTGCACTGTGGGGATGGTTGTGAGGATTCTTGAGTTTATGTGTCCACCACAGAGAAAGTTGCTACATTGCATAGATGTGCAGCATATTATAAGGGCCATGAGAGCATTTCTCACCATTCTCACCGTCGTCAAAATCATTCTACCTGACACAGACTTCTCTGTGTTCGGACTCTGATTCCTCCTCCGTCAAGCTCACTGTGTGTCTGTCCCTTCATCTCTTCTCAACAG
Seq C2 exon
GGCAGTCAGAGCATGACTCGCCACAGCAGATTTGTGTGACCACCGCATTTCCAAGGGACGCATCAAGAGTAATCACTAGAGGTGGTTCTTACTGTTCCATTATGGAGGAACCGTGGCAGGGTGGTGACCCTAAAAAGACAGATCAGCAAAACCAGATCCCACCCTCGAGTCCTGGTGCTTTCTTCAGCCAGAAAGCAGTAATCACAGACAACTGTGGTGGATGCGAAGCAGCCGGGGGATCCATTCCTTTAGGCCCCCACCTCATCTCTACACAAAAGGGATCTCCGAGACGTTGCCCGTGTGAGAAGACATTGCAGCCTAACCTGCAAACAGACAGCGAGCATCAAAGCAGTGCCACAAAGCAGCCTAATGGCGTTGTGGACTCTTGTCGTTTGTGCACACAAGGCCTTTCCAGTGCTGTGTGTACAACTCACAGCACAGGAGAGAGAGCATGCACAGGTAACCAGTGTGCCAACGTTCTCAGCCCTAGGTCACCACTTAGGCAGCATGGGATTCTTTCTCAGGACGAGCCGGTTGAGTATACCAAAGATGAGAAGGCCTTCACTGCCGGGTCAGCTTCATGTGAGCAGCAAACAACGAACACGCTAGACTTAGAGACACATTTTATTTGCCACATATGTGGAAAATCCTTTCTTCAGAAATCCGAGTTGAGTTTTCATCCAGGAACAAGCAGAGAGGAGACACGTTATGAATGTCCTGACTGTCTGAAATCACTTACTACCAGTCCATCCAGCCTGCAGGCGCATCATGAAGCTCACACAAAGCAGAAACCTTACACATGCCACGACTGCGGGAAGTCATTCAGTTATGCCTCCCACCTGAAGGTCCACCTTCGAATACACACGGGTGAGAGGCCTTATGTGTGTTCTGACTGTGGGAAGGCCTTTAGCCAAAAGTCAGTCCTCACCACACATCAGAGAATCCACACTGGGGAGAAGCCTTATGCATGCAGCCACTGTGGGAAATTGTTTGTCTATGCATCGGATCTGAGGAAGCACAGTCGGTTTCACACAGGGGAGAAGCCTTATGAGTGCAGAGACTGCGGGAAGGTATTCAGTAATAAATCTCACCTGCCCGTGCATCGCCGGATCCACACTGGTGAGAAGCCCTACAAATGCCGTGACTGTGGGAAGTCGTTCAGAAGAAAGTCCCACCTTCAAGTGCATGGCCGAACACACACGGGTGAGAAGCCTTATGCATGCCCTGACTGTGGGAAGGCCTTCAGCCACAGTTCAGTTCTCAGCACACATCAGAGAATCCACACTGGGGAGAGGCCTTACGTATGCAGCGACTGTGGGAAGGCCATGTCTTCTAAAGCTCAATTGAGTGAGCATCAAAGAGTCCACACAGGCGAGAAACCCTTCGTGTGCGTTGAATGTGGGAAGGCTTTCGGCGGCAGATCTTCCTTACAAGTACACCGCAGAACTCACAGCGGTGAAAAGCCGTTCGTCTGTCACAAATGCGGGAAGGGCTTCCTGCGCAAGTCACAGTTGTCGTCTCACCAACAAACTCACCCTGGTGAGAATCCTTAGGAGCTCGGTGCGAGCGTGTGCAATCATTGGGTCATATGTACCAGCTGAAGGAACATCATTGCACTGAAACAGAAGAAAATGTCCTCGACTGGGAAAGTTTTCAACAGCTGAAGGCTCGTCTTTCATTCTGTGCCGAGAAACCTAAGGTGGGTTTCAAACACAAGTCATATTTCAGTAGACCCAGTAGACCTGACACTATAGATACTGATCATGTGAAAGGCTTTACCACAAAGTCAATTCCTTATCCATGTTTTTAACTTAAATAAAGAGACCTAATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030160:ENSRNOT00000024662:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=NA C2=0.248
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]