MmuINT0179925 @ mm10
Intron Retention
Gene
ENSMUSG00000055102 | Zfp819
Description
zinc finger protein 819 [Source:MGI Symbol;Acc:MGI:1921650]
Coordinates
chr7:43612547-43618285:+
Coord C1 exon
chr7:43612547-43612639
Coord A exon
chr7:43612640-43616386
Coord C2 exon
chr7:43616387-43618285
Length
3747 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCATCTCTTTTTCTCAACAGGGG
3' ss Score
10.91
Exon sequences
Seq C1 exon
GGTATTCCAGGCCAGAGGTCATCCTCAAGATGAAGAAAGTTAAGGACTCGCCGATGGGGAAGGTTGATTTCCCACATCAGAGGTGTGGTCAAG
Seq A exon
GTGAGCGGCTATTGGCGGGTGGAGGTAGATAGCAGAGAGGTGTAATCAGCTACTGACTTACTCATCCCTCAGCAGTGGGTGCCTACATTGCCCCCCACCCCATCCTACCCCCAGGTTTTACAGTAGACACTGTACTCCATTTTGTCATGAGTAAACAATAGGGACAGAAATCTCCATGGGGAATATCCATGCAGATAAGCCTGCTTAAGTTTACTTCTGATGGTCTGCACAAATTCACAGGCTATGCTTGGAAATCATGAAACAGAAATCACACGCAGATTTCTGCTTGTACATCTTAGTTGTTAACAGTTGACATTATCAACTTATCAATATATTGCTTTTGTAATGAGTAAAAAAATGTTTCCCTTTAGTATATTCTTGTTTTTGAGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGCGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTTGGAAGAGGCCCAAAGAGTACTAGAGTTAGAGGTGGTGATGAGCACCGATGTGGGTGAAGGAAACGGAACGTGGGTCCTCTGGAGGAACAGCTGACACTCTTAACCACTGAGCTCTCTCTCTAGGCCCTTCTGTGATATCTTTTCCTAATTATTTAGAGCATCTCATTATATCCATTATATAACTAGATTTTTCTATGTGTATGTTATTTTTGTATGGTTTATCATTTTGTGGTCTTCTAATTCTTTCACTCCATTTATTTATCTCTTCCTTCGTGAGTGTTTTTTTTTTTTTTCATCCTGGATCTTCTTTGTGCCCTCCTAATTGTGGCACCACTATATTCCTTTTTAATAGGTTCCCGTATCGTTATCTCTTAGCACCTTTATGTCTCTGTTTATTTCTCTCTGTAAGCACAGGACACTCACACTGTGGATGTCTGAGAACAACTTAAAGAGTCAGTTCTCTCCGAGAGGTCAAACTCAGGTCATCGGGCTTGATGGCAAGCACCTGTACCAACGAGCCATCCTGTGGGCCCAGCCATACTTTCTTATAGGAACTGCCCTTTGGAGCCATTCTGTTTGGATCTCTTGGCTGGTTTTGTCAACTTGAAACGATGTCGACCCATCTGGAAAGAGTCTTTTTTTTTTTTTTTTTTTTGGTTTTTCAAGACAGGGTTTCTCGGTATAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGTCACCACGCCCAGCCTGGAAAGAGTCTTAATGAGGGATTGTCTTCATTAGGCTGGTCTGTGGAGGTGTCTCTGGGGAACGGTGCTGATTGCATTAATTGACCTGGGAAGACCCAGCTGTGTGGGTAGCACTGTTCTGCAATCGGGTCACAGATGGTGCGGGAGTACAGAGATCAAGCTGAGCAATAGCGAAGCTTGTGTTCAGTCTCCCTCTTCTCTTCACTGGGATGGGACCACTTGCTTCAGTTTCCTACCACCTAGAACTCCCAGAACGGATGGCCTCTCACCTAGAATGGTGATCTAAAATAAGTCCTTTTTCCCCTGAATGGCTTTTGTTGGGGTGTTTTATCACAGCAACAGAAATGAAACCCGACAGGCCTTACGTTCAAAGCGTGACGATGTGTATGTTAGCGTCTGCAGTCTCTGTGTGTGGTAAGCCTGCTACCAGATCTAGCTATTTAGAGGACTAGTTCTGTGGATGGCCCTTCCTTAGTCTTGAGACATGAGAAACTGGGGTCATCTTCATCCAAGTTAGAAAGTGATTTCCTATGAGCAACTTTGGTTTCTTGGTTTCTCTATTCTTCAGTTTATTGCTTCATATTTCCTTCTCTTTTTTATTTTCCAGTATTCAGCTTATGTGACTGTTTCTTAATTCCACTGAAACCAGTACAAACCAATTCTCTATATCCTTACTTAAACTTTTTGTTCATAATGATATTTGTGGGTCCCACTTAGGAACTTAGTTAATATTCTATTGACAGTTTCTCTTACAGCAAACATGTCCATTTCTTTCTCTTCTCCCTGATGAGTTGATGCAAATATTCAAGTTTTTTGCATGATGTAGAATTGATCAGTTCTTTCAGTGGCCGTCTCTTACCAATTTGTAAGTAAACGTCCCTGGGTATTTTCCCTCACTTGTGCTCGGAGCCACGGTTGTAGGTCTCTGCTGATGTCTGCTCTGCTGATCTTCCCCATGGCATACTGCCTGCCAGTTCGATTGTCTTCTCTGTGCTTGTTGTTGCTGCTGCTGTTGTTGTTTCGTAGAGTTTTAAGCCTTGTGAAAAGCGCTTTCAGCAAATAAAGAGTTCTGTGTATGCAATTCCTACAGATAGGCAGGAGGTACTGTTTTCTCCTGTTTTAGAAGATTTTTCAGTGTCCGCTAAAGTAAATGGAAGGAAACAGGCTGTAGTGGACATTGTGGAATAGTGGGGCGGGGGCGGGGAGGGGGGGGCTTTGTGTATGCCGAGTGTTTAAGGAAAGGCTGTTTGAGATGCAGCCATCTGAGGTGACATGGGAGTTGATTTTGAGCGCACATGGAGTGGTTTACTCCATAAAGTAATTTTGAATTGGTATAAAAGACCAAGCCAGGCAAGCTTAGTTGAGTTAGAGCAGTAGATCTCAACCTCCCTGACGCTGTGTGACCCTTTTTAATTCCTTCTGTTGTGGTGACTCCCAACCACAAAATTATTTTCATTGGCTACTTTATAACTATAATTTTGCTACTATAATTTATATGAAATTATAATATAAATATCTGATATGCAACCCCTATGAAAGGGTCATTTGACCCCTCTCCACACCTCGCAAGGGGTTGCGACCCACACAGGTTGAGAACTACTGAGTTAGAGGATCTGAGTAAATGCTTAGAGTTAGGAGTAACTGACCACTGTTGCGTTGACGTCCTTGAGCTCAACTGGAGTTATCTTATATGTATGAGTGTTTTGCTTCATGGACGCCCGTGTACTCCATGTGTGCCTGGTGAGCCATAAGAGAGTGTTGAATCCCCTGGAATTGACATTCCAGATGATTGTGAGTGGTCATGTGGGTGCTGGAAATCTCACACATGCACGAGTAAACAGATGTACACATGTGAACACATACACAAACACAGTAAGTAGACAATAAGACACACACACACACACAAAAAAAAAAAAAACCTTGGGAGTGTAAGGATTAGGAGCAAAGGCTTGCAAGAGCATGGTGAAGTCTGGAGTTAATCCTTACAAACAGAGGGAAATTTTAAAAAATGTAACAGCAACAAAACGGCTGAGAAAATGGCTTGTATCTCTTTCTTTTGACTTTGGCTGCCGGTTGGCTGTGCTCAGTGATGGCCATGTCTGTTTTCTCCCTTACTTATTTGTCCATCTGTATTTACAGCACTTGACCTCTTGCATAAATGGCTTGCCTTTCACCAAAACCAATTTCCCAACATATCTTGGCCATCCTGACTGAGGCTTCTGTCCTCATGAAGAAAGCAAGGTGTATAGGTGTGGGTGCACTGTGGGGTGACTGAGGAGTCAGTGAGTTTATGTATCCACGGCAGAGAAAGTCGCTGTATTACATAAGTGTGCGGCATACTATAAGGACCATGATAGCATCTCTCACCATTATCACCATCGTCAGAGTCATTTCTACCTGATGCAGATTTCTCTGTGTCAAGACGCTGATTCCTCCTCCGCCATGCTCACAGTGTCTGTTCCTTCATCTCTTTTTCTCAACAG
Seq C2 exon
GGGAGGCAGAGCATGACTCACACCAAATGTGTGTGAAGGCTGCATTTCCAAATGATGTATCAAGAGTAATCACTACAGGTGGCTCATATTGTTCCATTATCGAGGAACCGTGGCAGGGTGGTGACCCTAAAACTTCAGATCCGCAAAACCACATCCCACCCTCGAGTTCTGGTGCTTTCTTCAGCCAGAAAACACTAATCACAGATGGACGTGAAGCAGCTGGGGGATCCATTCCTTTAGGCGCCCACGTCATTTCTACACAAAAGAGATCTCTGAGATGTTGCCCGTGTGAAAAGACGTTGCAGCCTCACCTTCAAGCAGACAGAGACCATCAAAGCAGTGCCACAGAGCAGCCTGACGGCATTGTTGACTCTTGTCAGTCCTTCACACAAGGCCTTCCCACTGCTGTGTGTCCAATTCACAGCACAGGAGAGGAAGCACGCAGAGGGGACCAATGTGCAAGTGTTCCCAGCCCTCAGCAACCATTTATGCAGCATGGAACTCTTTCTCAGGACAAGCCAGTTGAATATACCAAATACGAGAAGGTCTTCACTGCCGGGTCAGCTTTGTGTCAGCAGCAAACAACTAACCCTCTAGAGACACATTTTATTTGCCACATATGTGGGAAATCCTTCCTTCAGAAATCTGAGTTGAGTTTTCATCCAGGAACAGACAGAGGAGAGACACATCATGGATGTCCTGGCTGTCGGAAATCACTTCCCAGTACATCCAGCCTGCAGGCACGGCATGGAACTCACACAAAGGAGAAACCTTACAGATGCCCTGACTGTGGGAAGTCATTCAGTTATGCATCCCACCTAAAGATCCATCTTCGAATACACACAGGTGAGAGGCCTTATGTGTGTTCTGACTGTGGGAAGGCCTTTAGCCAAAAGTCAGTCCTCACCACGCATCGGAGAATCCACACTGGGGAGAGGCCTTACACATGTAACCACTGCGGGAAATTGTTTGTCTATGCATCAGATCTGAAGAAACACAGTCGGTTTCACACAGGGGAGAAGCCCTATGAGTGCAGAGATTGTGGGAAGTTATTCAATAATAAATCTCACCTGCCTGTGCACTATCGCATTCACACCGGTGAGAAACCTTACAGATGCTGCGACTGTGGGAAGTCGTTCAGGAGAAAGTCCCACCTTAAAGTGCATAGCCGAACACACACTGGTGAGAAGCCTTATGAATGCCCTGACTGCGGAAGGGCCTTCAGCCACAGTTCAGTTCTCAGCACACATCAGAGAATTCACACTGGGGAGAGGCCTTACCTATGCAGCGACTGTGGGAAGGCCATGTCTTCTAAAGCCCAGCTGAATGAGCACCGAAGGATCCACACGGGGGAGAAACCCTATGTGTGCAGCGAGTGTGGGAAAGCTTTCAGTTGCCGATCTTCCTTACAAGCACATCGTAGAACTCACAGTAGGGAAAAGCCGTTTGTCTGTCACACATGTGGGAAGGGCTTCCTGCACAAGTCACAGTTGTCATCTCACCAACAAACTCACACTGGTGAGAACCCTTAGGAGCGCTGTGCGTGTTGTGTGCAGTTGTTTGCTCATACGTATCAGCTGAAGGGACATCATCCGATTGAAGCAGAAGAAAATGACCTTGACTGAGAGAGTTCTCAACAGCTGAAGGCTCTCGTCTTTCATTCTGTGCAGAGAAACCTGAGGTGGGTTTTGAATGCAGAAAGTCCTCCAAACACAAGTCAGATTTCAGTAGACCCAGCAGACCTGACACTATAGATACTTGGACCTGTGAAAGGCTTTACCACAAAGTCAATTCCTCATCCATGTTTTTAAATAAAGAGACCTAATATGCATTGCTTATTTTAAATACACAAATTATTATACCTGAGGAAAAGAATAAAGAATTTGTAAGAAGTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055102:ENSMUST00000032661:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.273
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types