MmuINT0179673 @ mm9
Intron Retention
Gene
ENSMUSG00000056592 | Zfp658
Description
zinc finger protein 658 [Source:MGI Symbol;Acc:MGI:2652821]
Coordinates
chr7:50823015-50830831:+
Coord C1 exon
chr7:50823015-50823113
Coord A exon
chr7:50823114-50827958
Coord C2 exon
chr7:50827959-50830831
Length
4845 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CACCTCTTTCCTTCTCCCAGAAG
3' ss Score
8.56
Exon sequences
Seq C1 exon
GCTACCCTGTTCCTAGCCCTGGGGCCATCTTCAGGATAAAGAAAAGAAAGGAGGCACGGACAGGAGAGGCCAAGCTCCCACATCCTTGTTGGTGTCAAG
Seq A exon
GTGAGTGAGTAGGCCCTGGATGGAGGTGGATGGTATTAGAGGGCCGGCACCAGCCTTCCTCACTCGTCCCTTCCCCTAGTGGTGGGCACCGAGCTTGTCTGCTTCCCGACTCTTTACAGCTAATGCTACAGTGCATTGTGAGTACAGACCAGGGTCGTGGGCACCAGGCTTGCCCCGACACTACCTCTCTACAGCTAATCCTACAATACTTTGTAACTATGGACCAGGAGTGAGGACACATATCTCAGTGGTGGAGTGGCAGGCTGACATTCAGAGAGCCTTGGGCTCAGTCTCCAGTGTGGCAGAAGTATAGGCAGACAGACAGCTGTGTCAGCGTGGAGAAGATACACTTGTGAGATACAAAGCTTTCAGCATAGCTGGTGATAGTCTCATTGGATCTTTTTAAGTTAGTTTGGTTGTCTTTTTCTTGTGATAGCTGTCACGAGTTTTCCTCTCCTGGCCTTTCCCATGCTGACCTCCTCCAGCCCCGTCTTGTTGGTCCCTCTCCTTGCTACAAATTGTCTCCTTTCTGCCTACATGTCACATATGTTCCACTACTCTTTTTCTTTTTTCTTCCTCCCTTAAGATCCCCTTTTTTGAAGTACCTTTTCCTACTTCGACTCTTTATATACAACACATACAGACATACCTATGCAGAAATTAAAATCTAGAGTCCACCTCTAAGAAAAAAAATGTGGTACTCTGTCTTCGAGTGCCACTTAATTCCCCTCACATCATGGCAAGTCCCATCCATGTCACTACAGTTGTCAGGATTTTGTTTTTTTTCCTTTATGGCTAACTAAAACCCCATGAGGTTGTATGTTCTGCGTGTATGTTCTGCATTCTGTTAATGCTTTCATCTCTTGAGAGACATCTGGTCTCATGTCTCCGTGCAGCATAAATATGGCTCTGCAAACATGTCTGCTTATGTTCATACAGAGTCCCTCCGGCATATAGGCAGGTCGGTCTGGCCGGGTCATATGGTAGTCCTGTTTTTAGTTCTTTGAGGACTTCTTTAGTGGCTACAGCAGTTGACACACCCTGGAGCAGTGCACGGGGGTGTAGCTTTCCTTTTTGGTGTTTCTTGTTTGTTTCTTTTCTTTTTTTTTTTTTTTAAAAGGATTTATTAATTTGTTTTCTGTGCATGAGTACACTGTTGCTGTCTTCAGACACACCAGAAGAGAACATCAAATCCCATTACAGATGGTTGTGAGCCACTGTGTCGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCCTAACCACTGAGCCATCCCACTAGCCCTGGATCTTTTCTTAATAGCCATTCTGACTAGGGTGACCTAGATATGAGAGAAGTTTGAAACTGTGTTTCTCTGATGATTAAAAATATTGAACATGTTTTCAAATGTGTATTGGCCATTTGAATACCTTTTGAGAATTATCCATTAAATAGATTATTGCTTGATTGGGGAATTTGGTATTTTTGCATAGTCTATATATTAATCTATAGTTAGAAAATATTCTTTGCCATTTTATAGGCTGCCTCTTCATTCTGGTGACTGTTTCTTTTGCTGTACGGGTTTTTATATAACCCCGTTTATCAGTTCATGGAATTTTTTCCCTGTGCTATTGCAGTCATTTTCTAGAAGTCCTAGACCATGCTTGTCTCATATATATATAGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATTTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTACTCTTAACCACTGAGCCATCTCACCAGCCCCCCCCGCCCCCCCATGCCTGTATCTTTAAGTTTTGCTTCTGTCTCTTGTAGGAGTTCTAGAATGCTATCTATTATATTAAGATTCTCAGTCTAAGTTGTTTATCAGGGCTTAAGAGACTTGCTGCTCTCCACAGCACCAAGTTTGGTTCCCAGTACCCATACGGCAGCTCACAACTGTCTGCAGTTCCAGTTCTAGGGGATTTGATCCCCACAGACACTATCAGCAAATACCCACACACATGAAACAAAGTAAATAAACATTTTTTTTTGTTTTTTTGTTTGTTTTTTGTTTATTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCTGGCTTAAATAAACATTTTTAAGAAAAGAGAAAGCTGGGGATTCAGCTTCATTTTTTTTACAGGTTGTCCCAGCACAATTTGTTAAAGATGCTTCTTAATATTCTTAATTCTTGAATGTGTTTTGAATTTTTTTCCTAAGATGTTTTGTGTCCATTTTTATTAAGGGAATTATTCTGTAGTTTCTGTTGTGGTTGTGGTTGTGGTTGTTGCTGCTGCTGTAGTTGTTGTTGTTGTGTTGTGTCCTTACAGTTTTGGTATTAGATGCCAACACTAGCTTCGTACAGTGTGTCTTTTAATGTTTCTCCCCTTTCTACTTTATGAAAAGGTTTAAGGAGTGTTGCCTGAAAGATTTGGGAAGATCCCCCGGTGAATCTTGGGCTTTTCTTTGCATGCAGGTGCTTCACTGTTGCTTCTTATGAATCTATTTTGTTTATATCTTCTTGACTTAATTTCCTTGGGTTTTTTCTTTGTTTTATTGTCTTCTTTTGTTGTTGTTTTTCAAGATGTGGTCTCATTATATAGCTCTAACTGTTCTGGATCTCACTCTGTAGACCGGGCTGGCCTTGAACTCAGAGATCCACCTGCCTCTGCCTCCCAAGTGCTGTGATTAAAGGCATGAACCACTACACCCAGCAGGGTTTTAACTTTCATAGGTCATATGTGACAAAAATTTTAATCATTTACTCTTATTTTTTTTAATTTTTTGTTTTTTAATGTAAGATTTCCAAGTACTCACTCCCCAGTATTTTGTATGCCTTTGGAAGCTGTTGTAATATTCTCTTTTTCCATTCTAATTTTATTAATTTGAGTCTTCTTTTCCTGTCAGTTGGGCTAGGATTTTTTCCATCTCACTTTTTTTTTTTTTTTTTTAAGTGTGTATGGTTGGGTGTTTTGCCTGCACAAACATATATACACCATGTGTGTGCAGTGCCCACAGAGGCCAGAAGAGGGCATCTGATCCCCTAGGACTGGTGTTCCAGTGAGTTGTGAGCTGCCATGTGGGTGCTAGGAACTGAGCAGTCAGTGCTCTTAACAACTGAGCAGTATTTTGAACCCCAATCTCCTTTTTTTCCTTCTGTGTATTCTGTTAGATCTTTTTTCTTTCATCTACTTTAGATTTTTGTCTTCCTCCTCTTCCTCTTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTCCTTCTCTTCCTCCTCTTCTCCTTCTCCTTCTTCTTCTTTGAGACCTTTAATTGCATCACTAAGTTGAACTCTCTGATTTCTTGAATGTAAATATCTCAGAAACCACCTTTCTCTTGGAACTCTCTGAGCTGTATCCAAAGATCATGGTAAGTTGGCATTCCTCTTCATTTTGTTCCAGAAATGCTTTCATTTCCTCCCCGATTTCTTTGTGACTCACTGTTTATTCAGAATATACTGTTCTATGTCCATGTATCTGTGCGGTTTCTGTGGTTTCCTTTCTGGTTGGCTTTTAGTTTTGTTTCATTATGGTCTTGTAAGATGCAGAGCATTTTTCCAGCTTTTTTTTTTTTGTATTGTTCAGATTTGTTTTGTAACCTAGCATATGGTCTGTTTTTTGGTTTTTGAGAAACTTCCATGGGCTGCTGAGGATTGTATTCCATTTCTGTTGGATGGAATATTCTGTAGATACCCCTTAGATATATGTGATCAGTGTTGTAGATTTTTCTTATTTATATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATAAATGCCACATGTATCAGGGTTTCCACAGAGGCCAGATGAGGATGTTGGATCCTCTGGAGCTGGAGTTAACAGGTTCCTGCTGTGGGTGCCGGAAACTAAACTCCAGCCTTCTACAGAAGCAGATGCTTATAACTGCTCATATAGAGTTGAGATCAGAAAAGTAAGGAAAGGCCACTATATGTGTAAATTGATGTTTTAAAAAAAAGGAAAATTTACTGATTTTAGATTATGGTTCAGAGATAGAGAATACTTTTCTAGATTAAGTAAACTTCCACCCCTAACAACAGTGAGTGACAGTGAGTCCTTAACTAGATGAACAAATGGGCCAAAGGCGTGAGTATGCTGTTCTCTAGAACTGATGGAGTCCTCTGCTCTGTTGGTCTCTGTTTGCTTTCAACTCTTGGCTACCTTGTAGTAGCCTTAACACTTTCTTCCCCTACCCCTCACCTCACTAGGTCTCCTACATGAGTCAAATTCATTGCCTTCGTCCAGACAATCTTCCCCACAGATTATCGCGGCCATCTTTACCACTGATCTAAGAATTCACATTACTGTTTCTTCATCTGTAAAACAGGGAAAGCGGTTGTAATTGCTTTATGAGATGGTTTGTGGGATAAAATGAGTTCGTTTCCATCATAAAGAAAGTTGCCTGGTAGTCAAGTGTCCCACGGCTAATGTGTGGCGTGTCATAAGGGATCTAGGCATGTTCTGCTCGTTGGCATAAGTACCTCACAGATTTTTTTTTCTTCGTGTTGCTTATTAACTCTGTGGTTTCTCACCCATCCTGTTCACTGTGCATATTCTTCTCACCTCTTTCCTTCTCCCAG
Seq C2 exon
AAGTGGAATCAGAGTTTTACAGGCCTCAGCAGAAAGCATCTGAGGAGGCAGCATTCCAAACTAGTAAGGCAAGCGCAGTCACAAGGCATGGCTTGTGGTGCTCGATTTTAGAAGAACTGTGGCAAGATCCTGACCCTGCACAAAGAGATGGGCAAAACCAGATCCCACCCTGGAGTCCTGGGGCTTCCCTCAACAAGAAAACAGCGCGAGCAGATAGAGACTGTGGGTGGAAAGAGCCCGGGAAGACCACTCCCTTCGTAGCTAACCTTTTTTCTACACAAAAGGGAGCTCCAAGGTTACTTGCAAAACGTTTGAACCCTAACCTTGAAGCCAACGGTGAAGAGCAAGGCAGTGTCACAAAACAGCTGAATGGTCTTGTTACATCTGCTCACCTCCTCCCGCAAGACTCTTCTAATGCTAACTGTACAATTCTTCGTGAAACATGGAATCCGTGCAAAGGTAACCAGTGCAGAAAAGTTCCCACCCATAAACAACTGACAGAGAAAGAAGCTCATTCTCGTGAGAAACTAGATGAAGGCACGGAATGTAGAAAAGTCTTCTATGACGAATCTGCTTTCTGTAAACACCAGGCAGCTCACGCTGGAGAAGGACCTTTTGTCTGTCACAAGTGTGGGGAAGCCTTCCTCCAGAAGACAGAGTTTGCCTCCCATCAAGAAACTCACCCAGAGAAACCTTATGAGTGTCCCGACTGCGGGAAGTCATTTAGTCGAACGTCCAACCTGCAGGTCCACCATCGAATTCACACTGGAGAGAAACCTTATGAGTGTCGGGACTGTGGCAAATCATTCAATAATACATCCCAGCTGAAGGTACATTATCGGATACATACAGGGGAGAGACCTTACGTGTGTCCCGTATGTGGGAAGGCCTTCAAGCAGAAATCAATCCTCAGCACGCATGAGACAATTCACACTGGGGAGAAGCCTTACAAATGTACCGTTTGTGGGAAACTGTTCAGCTGTACGTCCCGACTGAAAGTGCACTACCAGATTCATATGAAGGAGAAACCTTATGAATGCGGTGACTGTGGAAAAGCCTTCAAGCGAAAGTCAAGCCTCACCGTTCACCAGAAGATCCATATCAGACAAACACACCACGAGTGCAGCGAGTGTGGGAAAACGTTCAACCAGAAGTCCGAGCTCAGCACTCACCAGAGACTTCACCTGGGCAAGAATTCCCACAGATGCAGCGACTGTGGGAAATCGTTCACTTACGCATCCCAACTGAAGATGCACCGTCGGGTTCACACGGGGGAGAAGCCCTACAAGTGCCGGGACTGTGGGAAGTCCTTTACGTACTCATTCACGCTGAATGTGCATCGCCGAATTCACAAGGTGGAGAAGCCTCACAAGTGCAGCATCTGTGGGAAAGCTTTGGCGTCTAAGTACCAACTGGAAGAGCATGAGCGAATTCACACAGGAGAGAAGCCTTACGTGTGTACTGAATGTGGAAAAGGCTTCCATGGTAGGTCAGGTTTCCTAAGACATCAGATTACTCACACGAGGGATAAACCTTTCGTCTGTCATAAATGTGGGAAGGCCTTCTTTCAGAGGTCACAGCTGACATCTCATCAGCAGACTCACACAGGAGAGAAGCCTTATACGTGCCATTACTGCGGGAAATCATTCAGTCACACATCCCAGCTGACGGTCCATCATCGAATTCACACAGGGGAGAGACCTTACAAATGCGACTATTGTGCGAAGTCGTTCAGCAACTCCTCCCAACTGAAAGAGCATCTCCGCATTCATACCGGGGAGACGCCTTATGCATGTTCCGAATGTGGGAAGGCCTTCAGCCGACGATCGTCCCTCAATCTACACACGAAAATTCATACTGGAGAAAAACACCATATATGTAGTGAGTGTGGGAAAGCCTTTAGTCAGAAGTCAGTACTGCGGACACATCAGAGAATACACACTGGGGAAAAGCCTTACAAATGCAGTGACTGTGGGAAGGCCCTGGCTTCAAAGGGCCAACTTCGAGATCATCAGCGGATTCACACTGGCGAGAAACCCTACATGTGCCCTGAATGTGGGAAGGGTTTCTTTGGCAGGTCGTCTTTGCATAGACATCAGATAACTCACACTAAGGAGAGACCTTTTGTCTGTCAAAAATGCGGGAAGACCTTCATCCAGAAGTCAGCACTGACGTCCCATCAGCAAATTCACACAGGCGAGAAGCCCTATGTGTGCCCTGAGTGTGGGAAGGGCTTCTACAATAAGTCATCTTTACCTAGGCATCAGATGACTCACACTAGGGGGAGATCTTTTGTCTGTCAAAAATGTGGGAAGGCATTCCTCCAGAAGTCTGTGTTGAAATGCCATCAGCGGACTCACACTTGCAAGAAGCCTTAGCAATGCCATAGGAAATTGTTCCATAATAAAACCCACTGAGGGGCCCTCATCATCCCTACATAGAAATGCAGAGAGCATCCCAACTGGATGTGCAGCACTGGGTCTAGAATGGAGAGAGACACTACTGTGTTCTGAGTGTTAAAAGGCTTTTAACAGCATGTCAGATGATAATAAATAGCAAGCAGCTCATAGTAGACACAGTTCTTTTTAGGCTCAGTTTTTGTGTGAAGCATATTTCCTCATAGTCTATAAACATATTCCTAACTGAGGTATAATCTTTAAATTACTTGAAGAGAATGTTTTAAAAGAATTTATTGGGGCTGGAGAGATGGCTTAAGAGCGCTGGCTGCTCTCCCAGAGGTCCTGAGTTCAATTCCCAACAACTACATGGTGGCTCACAACCGTCTATAATGAGATCCGATGCCCTCTTCTGGTGTGTCTGAAAGCAGCGACAGTGTACTCACATACATGAAATAAATCTTTTTTTTTAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056592-Zfp658:NM_001008549:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.2),PF0009621=zf-C2H2=WD(100=3.0),PF0009621=zf-C2H2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.4),PF097235=Zn-ribbon_8=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.4),PF097235=Zn-ribbon_8=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=PU(88.5=3.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: