BtaINT0165787 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003456 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr18:65664493-65665106:-
Coord C1 exon
chr18:65665050-65665106
Coord A exon
chr18:65664582-65665049
Coord C2 exon
chr18:65664493-65664581
Length
468 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACTTGACTTTCCTCCCCCAGCTC
3' ss Score
9.04
Exon sequences
Seq C1 exon
GTATCCTTATGGACCAGTCCTGGGGAATGACGACTGTTGACCCGTGGGCCTCCTGGG
Seq A exon
GTGAGTCAAGACCCTGTTTCTTCATCAGACACATTGGTTACTATGTGGTGGTCTCTCCCATCAGTAACCTGCCATTGCTGGAAATCAGAGCTGGTGGGGAGAGAGGAGAGGGTCTGGTCCAGATCCGTCTCTTGGTAGAGCTGGAACAGGGAAGGATCTGAACACATCACTGAGGAATCTAGCGATGAAATTTCCAGAGCAGGATGCATGTGTAGCCATTTAGGGCTCAGACCCAGAAAGGCTGTGAACAGGCACTTTGGCTACGACAGTGCCTCAGGACAACAGGGGATGGGTCGTGTGTTTAGATTTATTGTTTAACTTCTCTGGATCCCACTGCCTTCATCTGTAATGTGAGGAAGTGGATCTTTTCCCTTGCCCAAATGGGAGGGACAGGGTCTGGAAGTAGTACTCAGCTGGGCCACTTCTGGCAGAGAGAGCTGCCTCTGTGACTTGACTTTCCTCCCCCAG
Seq C2 exon
CTCTGTGCCCTCAGGACTCTACCTGGCAAATGGAGGAGACCGCCGAAGAGAGGAGGAGGGCCCCAGGGCTCCCAACAGCCCAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003456:ENSBTAT00000004486:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development