RnoINT0168443 @ rn6
Intron Retention
Gene
ENSRNOG00000019127 | Zfp606
Description
zinc finger protein 606 [Source:RGD Symbol;Acc:1309810]
Coordinates
chr1:66253688-66254284:-
Coord C1 exon
chr1:66254246-66254284
Coord A exon
chr1:66253780-66254245
Coord C2 exon
chr1:66253688-66253779
Length
466 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACTTATTTTTCTGTTTGCAGCTC
3' ss Score
10.26
Exon sequences
Seq C1 exon
GTACCCTCATGGACCAGTCTGACCCTTCTGTCTCCTGGG
Seq A exon
GTGAGTTGAAAACCCTTACCCTCAACTGTGTTGCCGGCCATGTACCATCCTCTTCCTTCAGTGATCTGCCATAGCTGGGGTCAGAGCTGGTGACCCAGTGATTCTTTAGAACAGGAGCTTGTAGTTCAGCTCTCAGTACACAGCTGGAATAAAGAGGGGTCAGACAACTGTCTGTACGGGTAATGTGATGATCACATTTCTAGAGAATTAATGTTTAGGACTCAGACCAGAGAATCTATGAAAAGTGCTTCTCAGAGATGGTGCCTCATAGCATAGGTCAGTAAAGATTCACCTGTCACCTTTTCCAAGACCCATCTCCTTCATCTATAGGGTGAAGAAGTGGCTTTCTACCTTACCAGTGATGGTAAAGAACAGGGGCATGACCTAGCCCTTCTCATTTTCATAGATTACACGATGAACTTCTGACAGGAAGTGGTGCCTCCATGACTTATTTTTCTGTTTGCAG
Seq C2 exon
CTCTATGCCCTCAGGATCCAGCATGGCACATAGAGGGAAGCCCTGAGGAGAGCAGAAGACAGGCAGATGGGCTTCAAACAGCCCAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019127:ENSRNOT00000025981:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.603
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]