RnoEX0101544 @ rn6
Exon Skipping
Gene
ENSRNOG00000019127 | Zfp606
Description
zinc finger protein 606 [Source:RGD Symbol;Acc:1309810]
Coordinates
chr1:66253688-66256608:-
Coord C1 exon
chr1:66256508-66256608
Coord A exon
chr1:66254246-66254284
Coord C2 exon
chr1:66253688-66253779
Length
39 bp
Sequences
Splice sites
3' ss Seq
AATCTGATCCTTCTTTGCAGGTA
3' ss Score
10.07
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGACTTTATCTCTGTGCAGGACAGAAGCCGGACGCTCAGTGCAGCAGCCCCGGAGCTCAGCTCAGCCTCAGTGCAAGGTCGGGGCAGTGGCTGCGAGCCAG
Seq A exon
GTACCCTCATGGACCAGTCTGACCCTTCTGTCTCCTGGG
Seq C2 exon
CTCTATGCCCTCAGGATCCAGCATGGCACATAGAGGGAAGCCCTGAGGAGAGCAGAAGACAGGCAGATGGGCTTCAAACAGCCCAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019127-'1-1,'1-0,4-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.048 C2=0.603
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCAGCCTCAGTGCAAG
R:
GAAGCCCATCTGCCTGTCTTC
Band lengths:
119-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]