RnoALTD0034567-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000019127 | Zfp606
Description
zinc finger protein 606 [Source:RGD Symbol;Acc:1309810]
Coordinates
chr1:66254246-66256961:-
Coord C1 exon
chr1:66256861-66256961
Coord A exon
NA
Coord C2 exon
chr1:66254246-66254284
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AATCTGATCCTTCTTTGCAGGTA
3' ss Score
10.07
Exon sequences
Seq C1 exon
CAGCGTGAAGCGCTCCTCCTAGAAACTACAACTCCCAATAGTCCTCGCGGTGTGCCCTGGTCGACACTTGGGGGGTGCGGCCGCCATTGTCCCTGGCCAAG
Seq A exon
NA
Seq C2 exon
GTACCCTCATGGACCAGTCTGACCCTTCTGTCTCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019127-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]