RnoEX0101547 @ rn6
Exon Skipping
Gene
ENSRNOG00000019127 | Zfp606
Description
zinc finger protein 606 [Source:RGD Symbol;Acc:1309810]
Coordinates
chr1:66254246-66256905:-
Coord C1 exon
chr1:66256508-66256905
Coord A exon
chr1:66254959-66255041
Coord C2 exon
chr1:66254246-66254284
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTGGGAGCCTTGTCTCTAGGCT
3' ss Score
3.21
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CTGGTCGACACTTGGGGGGTGCGGCCGCCATTGTCCCTGGCCAAGGTAAGGCCTTATTCCAGACCGAGGGGCTACTGATGTCGTTGTCGTGGAGAGCCTGGCAGGTCGTGGTAACGACCACGGAGAAGCAGCGCCTGCAGCCAGTGCTGGCTCAGTGCCGGCGTGCAACGGGTGCCTTCTCTTTTTCTCGCCGACTCGGTGCCCCCGTTGCCCTCGACCCTCCGGCTCCGGGATCTGGGTGCGCGGTTTCTTTAGACTGGGAAAGACGGCTCTAGTGGGCCGAGTAGGCCAGGACTGGGACTTTATCTCTGTGCAGGACAGAAGCCGGACGCTCAGTGCAGCAGCCCCGGAGCTCAGCTCAGCCTCAGTGCAAGGTCGGGGCAGTGGCTGCGAGCCAG
Seq A exon
GCTGATACTTGCAGTGCTCCCAGACAGGACCCTGGCTGATTAATCCTCAGGGATGGCAGCCATCAACCCATGGCCCTCCTGGG
Seq C2 exon
GTACCCTCATGGACCAGTCTGACCCTTCTGTCTCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019127_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.061 C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCGGTTTCTTTAGACTGG
R:
GTCAGACTGGTCCATGAGGGT
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]