HsaEX0074025 @ hg19
Exon Skipping
Gene
ENSG00000166704 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:25879]
Coordinates
chr19:58499963-58512738:-
Coord C1 exon
chr19:58512657-58512738
Coord A exon
chr19:58512051-58512107
Coord C2 exon
chr19:58499963-58500089
Length
57 bp
Sequences
Splice sites
3' ss Seq
AACCTGATCCTTCTGTGCAGGTG
3' ss Score
8.74
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTTGGGATTTGCTGTGTTCCTGGGCAGGTGCCTGGTCAATCAGTCCTCGGGATGGCAGCCATCAACCCGTGGGCCTCCTGGG
Seq A exon
GTGCCCTTACGGACCAATCTTGGGGGATGACAGCTGTTGACCCATGGGCCTCCTGGG
Seq C2 exon
GAACCAGTGACCTTCAAGGACGTGGCCGTGGACTTCACCCAAGAAGAGTGGGGGCAGCTGGACCTTGTTCAGAGGACCCTGTACCGTGATGTGATGCTGGAGACCTATGGTCACCTGCTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166704_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGCCTGGTCAATCAGTC
R:
ATCACGGTACAGGGTCCTCTG
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)