MmuEX6008392 @ mm9
Exon Skipping
Gene
ENSMUSG00000030386 | Zfp606
Description
zinc finger protein 606 [Source:MGI Symbol;Acc:MGI:1914620]
Coordinates
chr7:13065013-13066375:+
Coord C1 exon
chr7:13065013-13065095
Coord A exon
chr7:13065784-13065840
Coord C2 exon
chr7:13066284-13066375
Length
57 bp
Sequences
Splice sites
3' ss Seq
AATCTGATCCTTCTCTGTAGGTA
3' ss Score
9.53
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCTGATACTTGCAGTGCTCCTGGGCAGGACCCTGGCTGGTTAATCCTCAGGAATGGCTGCCATCAACCCATGGCCCTCCTGGG
Seq A exon
GTACCCTCATGGACCAGTCTTGGGGGATGGCAGCTCCTGAGCCTTCTGTCTCCTGGG
Seq C2 exon
CTCTGTGTCCTCAGGATCCAGCATGGCACATGGAGGGAAGCGCTGAGGAGGACGGAAGAAAGACAGGTGGGCTCCCAGTAGCCCAAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030386-'4-2,'4-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.300 C2=0.731
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACTTGCAGTGCTCCTGGG
R:
CTTTCTTCCGTCCTCCTCAGC
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: