BtaEX0041432 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003456 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr18:65664493-65665965:-
Coord C1 exon
chr18:65665856-65665965
Coord A exon
chr18:65665050-65665106
Coord C2 exon
chr18:65664493-65664581
Length
57 bp
Sequences
Splice sites
3' ss Seq
AACCTGACCCTCTGGTGTAGGTA
3' ss Score
7.22
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGGGTTTTGCAGTTGGTTTTCAATAATCACCCAAATCCACTGCTCCTCGGCGAGCGTCTGGTGGATTAATCCTGCAAGATGGCTGCCATCAACCCGTGGGGTTCATGGG
Seq A exon
GTATCCTTATGGACCAGTCCTGGGGAATGACGACTGTTGACCCGTGGGCCTCCTGGG
Seq C2 exon
CTCTGTGCCCTCAGGACTCTACCTGGCAAATGGAGGAGACCGCCGAAGAGAGGAGGAGGGCCCCAGGGCTCCCAACAGCCCAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003456-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCAAATCCACTGCTCCTC
R:
CTCTCTTCGGCGGTCTCCTC
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development