MmuEX6008392 @ mm10
Exon Skipping
Gene
ENSMUSG00000030386 | Zfp606
Description
zinc finger protein 606 [Source:MGI Symbol;Acc:MGI:1914620]
Coordinates
chr7:12479664-12481026:+
Coord C1 exon
chr7:12479664-12479746
Coord A exon
chr7:12480435-12480491
Coord C2 exon
chr7:12480935-12481026
Length
57 bp
Sequences
Splice sites
3' ss Seq
AATCTGATCCTTCTCTGTAGGTA
3' ss Score
9.53
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCTGATACTTGCAGTGCTCCTGGGCAGGACCCTGGCTGGTTAATCCTCAGGAATGGCTGCCATCAACCCATGGCCCTCCTGGG
Seq A exon
GTACCCTCATGGACCAGTCTTGGGGGATGGCAGCTCCTGAGCCTTCTGTCTCCTGGG
Seq C2 exon
CTCTGTGTCCTCAGGATCCAGCATGGCACATGGAGGGAAGCGCTGAGGAGGACGGAAGAAAGACAGGTGGGCTCCCAGTAGCCCAAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030386-'5-2,'5-1,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.350 C2=0.726
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACTTGCAGTGCTCCTGGG
R:
CTTTCTTCCGTCCTCCTCAGC
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types