RnoEX6001176 @ rn6
Exon Skipping
Gene
ENSRNOG00000019127 | Zfp606
Description
zinc finger protein 606 [Source:RGD Symbol;Acc:1309810]
Coordinates
chr1:66237363-66254284:-
Coord C1 exon
chr1:66254246-66254284
Coord A exon
chr1:66253688-66253779
Coord C2 exon
chr1:66237363-66237489
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACTTATTTTTCTGTTTGCAGCTC
3' ss Score
10.26
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTACCCTCATGGACCAGTCTGACCCTTCTGTCTCCTGGG
Seq A exon
CTCTATGCCCTCAGGATCCAGCATGGCACATAGAGGGAAGCCCTGAGGAGAGCAGAAGACAGGCAGATGGGCTTCAAACAGCCCAAGACCAG
Seq C2 exon
GAACCAGTGACTTTCAAAGATGTGGCTGTGGCCTTTACCCAAGAAGAATGGGAGCAGCTAGACCTTGTTCAGCGGACTCTGTACCGTGATGTGATGCTAGAGACTTATGGACACCTACTTTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019127-'4-8,'4-1,5-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.603 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGGACCAGTCTGACCCT
R:
CCACAGAAAGTAGGTGTCCAT
Band lengths:
161-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]