MmuEX6008391 @ mm9
Exon Skipping
Gene
ENSMUSG00000030386 | Zfp606
Description
zinc finger protein 606 [Source:MGI Symbol;Acc:MGI:1914620]
Coordinates
chr7:13065784-13075045:+
Coord C1 exon
chr7:13065784-13065840
Coord A exon
chr7:13066284-13066375
Coord C2 exon
chr7:13074919-13075045
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACTTCTTTTTCTATTCACAGCTC
3' ss Score
9.82
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTACCCTCATGGACCAGTCTTGGGGGATGGCAGCTCCTGAGCCTTCTGTCTCCTGGG
Seq A exon
CTCTGTGTCCTCAGGATCCAGCATGGCACATGGAGGGAAGCGCTGAGGAGGACGGAAGAAAGACAGGTGGGCTCCCAGTAGCCCAAGTCGAG
Seq C2 exon
GAACCAGTGACTTTCAAAGATGTGGCTGTGGCCTTTACCCAAGAAGAATGGGGACAGCTAGACCTTGTTCAGCGGACTCTGTACCGTGATGTGATGCTGGAGACCTATGGACACCTACTTTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030386-'5-9,'5-2,7-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.731 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCATGGACCAGTCTTGG
R:
AGGTGTCCATAGGTCTCCAGC
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: