HsaEX0074026 @ hg19
Exon Skipping
Gene
ENSG00000166704 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:25879]
Coordinates
chr19:58499963-58512107:-
Coord C1 exon
chr19:58512051-58512107
Coord A exon
chr19:58511176-58511264
Coord C2 exon
chr19:58499963-58500089
Length
89 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTCTCGTTTCCTAGCTC
3' ss Score
8.84
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGCCCTTACGGACCAATCTTGGGGGATGACAGCTGTTGACCCATGGGCCTCCTGGG
Seq A exon
CTCTGTGTCCTCAGTATCCTGCCTGGCACGTGGAGGGAAGCCTGGAGGAGGGGAGGAGGGCCACTGGGCTCCCAGCAGCCCAGGTTCAG
Seq C2 exon
GAACCAGTGACCTTCAAGGACGTGGCCGTGGACTTCACCCAAGAAGAGTGGGGGCAGCTGGACCTTGTTCAGAGGACCCTGTACCGTGATGTGATGCTGGAGACCTATGGTCACCTGCTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166704_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATCTTGGGGGATGACAGC
R:
CCACAGAGAGCAGGTGACCAT
Band lengths:
171-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)