BtaEX6084489 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003456 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr18:65653868-65665106:-
Coord C1 exon
chr18:65665050-65665106
Coord A exon
chr18:65664493-65664581
Coord C2 exon
chr18:65653868-65653994
Length
89 bp
Sequences
Splice sites
3' ss Seq
ACTTGACTTTCCTCCCCCAGCTC
3' ss Score
9.04
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTATCCTTATGGACCAGTCCTGGGGAATGACGACTGTTGACCCGTGGGCCTCCTGGG
Seq A exon
CTCTGTGCCCTCAGGACTCTACCTGGCAAATGGAGGAGACCGCCGAAGAGAGGAGGAGGGCCCCAGGGCTCCCAACAGCCCAGGCCCAG
Seq C2 exon
GAACCAGTGACCTTCAATGATGTGGCTGTGGACTTCACACAAGAGGAGTGGGGGCAGCTGGACCTTGTTCAGAGGACCCTGTACCGTGACGTGATGCTGGAGACCTATGGGCACCTGCTCTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003456-'3-7,'3-3,4-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.750 C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGGAATGACGACTGTT
R:
CTACAGAGAGCAGGTGCCCAT
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]