HsaINT0187818 @ hg38
Intron Retention
Gene
ENSG00000166704 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr19:57999808-58000739:-
Coord C1 exon
chr19:58000683-58000739
Coord A exon
chr19:57999897-58000682
Coord C2 exon
chr19:57999808-57999896
Length
786 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACTTTTTTCTCGTTTCCTAGCTC
3' ss Score
8.84
Exon sequences
Seq C1 exon
GTGCCCTTACGGACCAATCTTGGGGGATGACAGCTGTTGACCCATGGGCCTCCTGGG
Seq A exon
GTGAGTCAAGAGCCTGGTCAGCTGTGGGCTGCCATATTGTGGCCTCTGGCTGTAGTGCTCTGCCACAGCTGGGGAATAGAATGGGGACCAGGTGGGGCTTTAGGGCAGGTGGTCCAGATCTGTCTCTGTGCAGAGCTGGAACAAGGAGGAATCAGAAAACTAGTGGCCAGGCGTGGTGACTCACGCCTACAGCACTTTGGGAGGCCGAGGCGAGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAACAAAATACAAAAAATTAGCTGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAGCCAGGAGGCGGAGCGTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCAGTCTCAAAAAAAAAAAGAAAACCAGTGAGCAGTAAGGTGATGGTGACATCTCAAGATGCATGAGAATTCATGTGTGGCCGTTTAGGGTTCAGGCCCAGGAAGGTTGTGACCAGACACTGCTTCTCAGAGATGGTACCCAATAGCACAGGGGGGGCCAATGAGAGATTCATGTGTTTAGGTACTTTCCTAACCTTCTCTGAGCCCTAATTCCTTCATCTATAGAATGAGGAAGTGGGTCTCTTTCCTCATTCAAGGGGGAGGGGCAGGGGCTGGTTCTCAGCCCCCCAGAAGAAAAGGTGAGCTCCTGGCAGCGAGAGCTGCCTCCATGACTTTTTTCTCGTTTCCTAG
Seq C2 exon
CTCTGTGTCCTCAGTATCCTGCCTGGCACGTGGAGGGAAGCCTGGAGGAGGGGAGGAGGGCCACTGGGCTCCCAGCAGCCCAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166704:ENST00000341164:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains