BtaINT0165813 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038487 | ZNF613
Description
zinc finger protein 613 [Source:HGNC Symbol;Acc:HGNC:25827]
Coordinates
chr18:58134973-58135474:+
Coord C1 exon
chr18:58134973-58135099
Coord A exon
chr18:58135100-58135381
Coord C2 exon
chr18:58135382-58135474
Length
282 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GTCTCATTTCCCATGAACAGGGT
3' ss Score
7.76
Exon sequences
Seq C1 exon
CGATCACTGACACTGGAGGATGTGGCCGTGGACTTCACGTGGGAGGAGTGGCAGCTCCTGGCTCCTCCTCAGAAGGCCCTGTACCGGGACGTGATGCTGGAGAACTATAGCAACCTGGTGTCTGTGG
Seq A exon
GTGAGGACGGCTCCTCCGGGTCCCTCAGAGAGTCCCCAGTCAGTGGCCTTTCTTATTTTGGCTTCGGCTTCTGAAAGCTCTTCCGTGTCCATGGTGCCCTGAAGTGGTACCTGAGTCTCAGTTTCCTCTCTGGTCCCAGACTAGAGAGTATGACGTGCCCTTCCCTGAGAGATGAGCCTTCTCTTGGCTAAGCTGCACACTGTGTACTTCCTAAAATATAACTCCACGCTGGCAGACCACAACCCAAGTCAAGAGCCTATCTGTCTCATTTCCCATGAACAG
Seq C2 exon
GGTATCAAGCCAGCAAGCCAGCTGCTCTCTCCAGATTGGAACGAGGAGAACTGTGGCCCGTGGAAGACAAAGTCCACAGTCGAATCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038487:ENSBTAT00000052047:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCACTGACACTGGAGGATG
R:
ATTCGACTGTGGACTTTGTCTTCC
Band lengths:
212-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development