RnoINT0168015 @ rn6
Intron Retention
Gene
ENSRNOG00000046469 | Zfp300
Description
zinc finger protein 300 [Source:RGD Symbol;Acc:2321626]
Coordinates
chrX:908044-908574:+
Coord C1 exon
chrX:908044-908255
Coord A exon
chrX:908256-908481
Coord C2 exon
chrX:908482-908574
Length
226 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TGTATTATTTCCCATTACAGGGT
3' ss Score
8.72
Exon sequences
Seq C1 exon
TTAAAGTATTAAATTAAAGATTTACTAATATTTGGAAATCATGTTACTTTTTCAAAACTAATTGAATAAAAGTATACAATTACAGGGATCAGTGTCATTTGAGGATGTATCTGTGGACTTCACTCAGGAAGAATGGAATCAACTGGACCCTGTTCAGAGGAGCCTATACAGAGACGTGATGCTAGAGAATTATAGCCATCTTGTCTCTTTGG
Seq A exon
GTGAGGATGGTCTGTTGAGTAATTTATAGTTTCCTTAATAATGTGACTTTCTGTTTCTAAAGTTTCAATACCTTGGGTTCTGGGGACCAAAGTTCTTATTTCCTCTTAGATACAGAAGATGTTAGTTGCCTATGTGAAACATATCCTTTTTAAAACATACCTTATTAATTTTGGAAGGCTGAATGTCACACACAGTACCCAAATTTTGTATTATTTCCCATTACAG
Seq C2 exon
GGTATCCTATAACCAAACCAGAAGTGATCAGCTCTTTAGAGCAAGGAATCCTTGGGATCATAAAGAAAGAAATCCCAAGTTCAAATTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046469:ENSRNOT00000072087:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATACAATTACAGGGATCAGTGT
R:
CTGTGCAATTTGAACTTGGGA
Band lengths:
236-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]