BtaINT0165783 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005240 | ZNF605
Description
zinc finger protein 605 [Source:HGNC Symbol;Acc:HGNC:28068]
Coordinates
chr17:44972113-44972563:-
Coord C1 exon
chr17:44972443-44972563
Coord A exon
chr17:44972206-44972442
Coord C2 exon
chr17:44972113-44972205
Length
237 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TCTGTGTTTCCAATTGACAGGTT
3' ss Score
8.13
Exon sequences
Seq C1 exon
ATATCGTTTGAAGATGTGGCTGTGAATTTCACATTGGAGGAGTGGCAGCTGCTTAATCCTACTCAGAAGACCTTGTACAGAGACGTGATGTTGGAGAACTATAGCAATCTAGTTTTATTGG
Seq A exon
GTAAGAACATTCTCATGTAGTACAGTGCATACCCGGTAACTGGATATGCACATACCTCTAAGATATTACTGACTTTGGATTTAAGTTTCACATGTCAAAGAGTCTTTGATTTTGACACCCAAGTGAAAAGTTTTTATTTGCTTTCTTTGTTTTATAGCCTCTGAGGTGAAATAGTCTTCATATTTAAGAGTCCCCTCAGCCCAAGCAATTGGGACTCTCTGTGTTTCCAATTGACAG
Seq C2 exon
GTTATCAAGTTATCAAACCTGAGATGATCTTCAAGCTGGAGCAAGAAAACCCATGGTTATTAGATGAAGAAATCCTAAGTCAAAACTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005240:ENSBTAT00000006896:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTTTGAAGATGTGGCTGTGA
R:
CTGAGAAGTTTTGACTTAGGATTTCT
Band lengths:
212-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development