HsaINT0187812 @ hg19
Intron Retention
Gene
ENSG00000196458 | ZNF605
Description
zinc finger protein 605 [Source:HGNC Symbol;Acc:28068]
Coordinates
chr12:133509299-133509741:-
Coord C1 exon
chr12:133509621-133509741
Coord A exon
chr12:133509392-133509620
Coord C2 exon
chr12:133509299-133509391
Length
229 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TCTGTGTTTCCAATCGACAGGTT
3' ss Score
8.17
Exon sequences
Seq C1 exon
ATATCATTTGAGGATGTGGCTGTGGATTTCACGCTGGAGGAATGGCAGCTACTTAATCCTACTCAGAAGAACTTGTACAGAGATGTGATGTTGGAGAACTATAGCAATCTGGTTTTCTTGG
Seq A exon
GTAAGAACATTCTTATGTAACTTAGTGTATGGCCAGTAACTGGCCTGTGAGGTGTTTGTTTATTTTGGATGTAAGTTTTACATGTCAAAGATTATTTGACTTTTATACTGAATTGAAAGATTTTCATTCACTTGCTTTATTTTGCAGCCTTTATAATAAAACATTCTACATATTTAAGACTCTTAGCCCAGGCAGTTAGGTCCAAGTCCTCTGTGTTTCCAATCGACAG
Seq C2 exon
GTTTTCAAATTCTCAAACCTGATGCAATGTTCAAACTGGAACAACAAGATCCATGGATAATAGGTCAAGAAATCCTAAATCAGAACTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196458-ZNF605:NM_001164715:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGAGGATGTGGCTGTGGA
R:
AGTTCTGATTTAGGATTTCTTGACCT
Band lengths:
204-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)