MmuINT0179537 @ mm9
Intron Retention
Gene
ENSMUSG00000023284 | Zfp605
Description
zinc finger protein 605 [Source:MGI Symbol;Acc:MGI:2444933]
Coordinates
chr5:110552779-110553464:+
Coord C1 exon
chr5:110552779-110552899
Coord A exon
chr5:110552900-110553371
Coord C2 exon
chr5:110553372-110553464
Length
472 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TCTTTGCTTCTAATTTATAGGTA
3' ss Score
8.79
Exon sequences
Seq C1 exon
ATATCATTTGAGGATGTGGCTGTAGACTTCTCCTGGGACCAGTGGCAGCTGCTTAGCCCTACTCAAAAGAGTTTATACAGAGATGTGATGTTGGAGAACTGCAGCAGCCTTGTCTTCTTGG
Seq A exon
GTGAGAATCTCTGCTGTGATTTAGTGTGTGGCGAGTAAGCATTCCTTCGATGTGTTTCCTGATTTAGATATTAGTATCAAATTTCAAATCTCCTCATTTCTATACCATTTCTATATATATAATGATTTTTTTCAGTCACTTGTTTTATTTTATGTTCTTTAATGTTTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTTTTGCTTGTATGCATTTGCATCACATAGATGTCTGGTGCCCACAAAGGTCAGAAGAGGTGGGTTGGATTCCATGGAACTAGAGTAACAAATGATCATGAGCCACCATGCTGGGAACTGAACCCTGACAAATGCTCTTAACCACTGGACCATCTCTCCAGCCCTGCATTTCTTGGTCTTTATAATAACATTTCTTTATGTTTGAGTTTCTCAACTAAAGCAATTGGGTTCTAATTCTTTGCTTCTAATTTATAG
Seq C2 exon
GTAATCAAACCACCAAACCTGATGTAACTTTCAAGCTAGATCAGCAAGAGTCACGGATAATGGATGAAGAATGCCTAAGTCAAAACTTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023284-Zfp605:NM_001163996:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATTTGAGGATGTGGCTGT
R:
AGTTTTGACTTAGGCATTCTTCATCC
Band lengths:
206-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: