BtaINT0122959 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010291 | RBAK
Description
Bos taurus RB-associated KRAB zinc finger (RBAK), mRNA. [Source:RefSeq mRNA;Acc:NM_001191256]
Coordinates
chr25:39087151-39087640:+
Coord C1 exon
chr25:39087151-39087277
Coord A exon
chr25:39087278-39087544
Coord C2 exon
chr25:39087545-39087640
Length
267 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TGACTCTTTCTCATTCACAGGGT
3' ss Score
10.38
Exon sequences
Seq C1 exon
GGGTCAGTATCGTTCAGGGATGTGGCTGTGGACTTCACCCAGGAGGAGTGGCAGCAGCTAGACCCTGAGGAGAAGATGACCTACAGGGACGTGATGCTGGAGAACTACAGCCACCTTGTCTCCGTGG
Seq A exon
GTGAGGAGAACTGCCTTCTGAGTTGCTGCTCTACAGGGGCTTACAGTTTAAAGACTTTATGCTTGACTTTGAGGAAATCAGTAAGACCATTTAATTCCTTTTGGGCACCAGTTAGATTAATTTGTATCTTTGCTTCTCCATTGAAAGGCTCTATTTTTGATTAAGTGCAAAAATAGACACTTTATTCTGCAGCTCCTGAGGCAGCAGCTTCTGTTTAGGGACCCAGAACCCAGCAGCTGGTCCATGTTGACTCTTTCTCATTCACAG
Seq C2 exon
GGTATGACAGCACCAAACCCAATGTGATCATCAAGTTGGAGCAAGGAGAAGAGCCATGGGTAGTAGACAGCAAGTTCCTACAGCAGCAGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010291:ENSBTAT00000013588:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCAGTATCGTTCAGGGATG
R:
CTGAATGCTGCTGCTGTAGGA
Band lengths:
223-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]