MmuINT0070099 @ mm9

Intron Retention

Gene

ENSMUSG00000078496 | Gm13152

Description

predicted gene 13152 [Source:MGI Symbol;Acc:MGI:3701121]

Coordinates

chr4:146884862-146887529:+

Coord C1 exon

chr4:146884862-146884988

Coord A exon

chr4:146884989-146886453

Coord C2 exon

chr4:146886454-146887529

Length

1465 bp

Sequences

Splice sites

5' ss Seq

TGGGTAAGA

5' ss Score

8.91

3' ss Seq

TCCCCCCCTTTTTTTTCCAGAAA

3' ss Score

11.08

Exon sequences

Seq C1 exon

GGTCTGTTAACCTTCAAGGATGTGGCCGTGGAATTCTCACTGGAGGAATGGGAACGTCTCAGTTTTGCTCAGAGGTCATTGTACATAGATGTGATGTTGGAGAATTACAACAATCTGTTGTTTGTGG

Seq A exon

GTAAGAATGAGCTTCTTGTCGAATTCCTGTTTCTTTCTTTCAGTTTTCCTACTATGTGTTTATGTAAATGCTCTGAGATATCCAGAGACTCCTGAATGAGGGAAATTGTAGTTAAAATCATAACTTTTCCATTGTGTTTCCTTTACATTTCTCTGCTTTCTTTGGAAAAGTAACCAGTGCTATATTCTCTGAGATTACTCCTAATCTCTTATCTAGCTTCACTCAAGATAAAAATGTTCAAGTAATAACTTAAATATCCAGAATAAGAATATGTATATTTTTATACATATAATAGTTGCAATTGTAAAAAAAATTTTACTATTGCTTTAAAATGTTCCCTTATTTATGAATCTAAAAATATACAAGGTTTCAAGTGGATATAGAGGTGTTGGTTTGGTCAATTTTTTTTATTTAACTTTTTGACATTTGATCTCTGTGTTTAGATCTGGGACAACATGATCTTTATCCTAGCATTTTGGATGTTGAAACAAATCTATTTAGTGATTTCCCTGACACTATCAGCTATATCATAAATTTATACCTGACCAAATTTATACCTGATTTAGTGTCACTCTGAATCAAACTGTAACCATAGAATTAGAGATATATTATATAGAGTTCTACTTTCTAAAAATTCACTACAGATGGATCATTTATTTGTCCCAGCTTATGGAAAGTACAATTTTCTTTTTTATTGATCATTTTATTCATTTACATGTCAAATGTTATGCCCCTTCTCCATTCCCTGTCTGGAAAATCTATATCCCACCCCCCACCCCACCCCCGGCTTTTATGATGATGCCCCACCACCGATCCACCTACTCCCACCTCATGCCCCTAGGATTCTCCTATGCTGGGATACTGAACCATCACAGTACCAAGGGACTTTGCTCTTGTTGTTGCCACATAAGCCAATCCTCTGCTATATTTAAAGCTGGAGCCATTTGTACTTCCACTTTGTTTGGTGACTTGACCCTTGGGAACTTTGTGTGGTCTTGTTGTTTGATATTGTTGTTCCTCCTACACAGTTGCAAAGCCTTTCAGCTTCTTCAGTCCTTCCTTTAACTCCTTCATTGTAGTCCCCTTGCTCAGTCCAATGGTTGGCTGCAAGGATCTGATTCTCTTTGGTCCAGTCTCTGGATGGCCTTCCCTTCAGCCTCTTTTCCATTCTTTGTCCCTCTTTTTCCTTAAGACAGGAGCAATCCTGGGTTATTATATTTGAGGTGGGTATGATGTCCAATTTGAAAATAAAATTTAGAACGCTATTATCATTTTCAGTCTTTTGATATAAACCATATTTGAGATTCTTCTGAGGATACATGTAATGATTCAAAAAAAGAAAAAAGAAAGGAGAAAAACCTCTCTTGAGAGAACGAATCCCAGAGTTCACTGATTATTGAATCCCTTACTTTCTTATATAAGTAATTCATGTCACCTCTAATTCCTCCCCCCCTTTTTTTTCCAG

Seq C2 exon

AAAATCATTTCATATGTGCAAAGTGTGGGAAGGCCTTGGATGAAGACAGCCAGTACATTGTCCATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGAACAAGCTTAGCAATGTTATTCTTGAATCCCCCCATTGTGTACCTCACAAATGTAGTGAATGGGACAAATGCTTTTCCCAAAGATCCCATCTTAGTATTCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACTGAAAAAGGCATACTGAGAATTCATCAGAAAATTCATTCAGGAGAGAAATCTTACAAATATCATGAATGTGACAAGTGCTTTCCCAAAAAATCCCATCTTAGTATTCATCTGAGAATTCATAAAGGAGAGAAACCCTACAAATGTAGTGACTGTGACAAATGCTTTACTGAAAAACGCAAACTGAGAAGGCATCAGAAAATTCATACAGGAGAAAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTATACAAAAATACAGTCTTAGTGATCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTAACAAATGCTTTATACAAAAATCCAGTCTTAATAATCATCAGAGTATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGATAAACGCAATCTGAGAAGGCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGAGAAATGCTTTACTGACAAAGGCAGTCTGAGAAGGCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGAGAAATGCTATACTGACAAAGGCAGTCTGAGAAGGCATCAGAAAATTCATAAAGGAGAGAAACTTACAAATGCAGTGAATGTGACAAATGCTTTACTGAAAAAGGCAATCTGAGAATTCATCAGAAAATTCATTCAGGAGAGAAACCTTACAAATGTCATGAATGTGACAAGTGCTTTCCCAAAAAATCCCATCTTAGTATTCATCTGAGAATTCATAAAGGAGAGAAACCCTACAAAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000078496-Gm13152:NM_001039209:2

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.038

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3),PF0041217=LIM=PU(41.3=44.2)

A:

NA

C2:

PF0135222=KRAB=PD(0.1=0.0),PF0041217=LIM=PD(56.5=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000068021