MmuINT0070099 @ mm10
Intron Retention
Gene
ENSMUSG00000078496 | Zfp982
Description
zinc finger protein 982 [Source:MGI Symbol;Acc:MGI:3701121]
Coordinates
chr4:147510753-147513486:+
Coord C1 exon
chr4:147510753-147510879
Coord A exon
chr4:147510880-147512344
Coord C2 exon
chr4:147512345-147513486
Length
1465 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TCCCCCCCTTTTTTTTCCAGAAA
3' ss Score
11.08
Exon sequences
Seq C1 exon
GGTCTGTTAACCTTCAAGGATGTGGCCGTGGAATTCTCACTGGAGGAATGGGAACGTCTCAGTTTTGCTCAGAGGTCATTGTACATAGATGTGATGTTGGAGAATTACAACAATCTGTTGTTTGTGG
Seq A exon
GTAAGAATGAGCTTCTTGTCGAATTCCTGTTTCTTTCTTTCAGTTTTCCTACTATGTGTTTATGTAAATGCTCTGAGATATCCAGAGACTCCTGAATGAGGGAAATTGTAGTTAAAATCATAACTTTTCCATTGTGTTTCCTTTACATTTCTCTGCTTTCTTTGGAAAAGTAACCAGTGCTATATTCTCTGAGATTACTCCTAATCTCTTATCTAGCTTCACTCAAGATAAAAATGTTCAAGTAATAACTTAAATATCCAGAATAAGAATATGTATATTTTTATACATATAATAGTTGCAATTGTAAAAAAAATTTTACTATTGCTTTAAAATGTTCCCTTATTTATGAATCTAAAAATATACAAGGTTTCAAGTGGATATAGAGGTGTTGGTTTGGTCAATTTTTTTTATTTAACTTTTTGACATTTGATCTCTGTGTTTAGATCTGGGACAACATGATCTTTATCCTAGCATTTTGGATGTTGAAACAAATCTATTTAGTGATTTCCCTGACACTATCAGCTATATCATAAATTTATACCTGACCAAATTTATACCTGATTTAGTGTCACTCTGAATCAAACTGTAACCATAGAATTAGAGATATATTATATAGAGTTCTACTTTCTAAAAATTCACTACAGATGGATCATTTATTTGTCCCAGCTTATGGAAAGTACAATTTTCTTTTTTATTGATCATTTTATTCATTTACATGTCAAATGTTATGCCCCTTCTCCATTCCCTGTCTGGAAAATCTATATCCCACCCCCCACCCCACCCCCGGCTTTTATGATGATGCCCCACCACCGATCCACCTACTCCCACCTCATGCCCCTAGGATTCTCCTATGCTGGGATACTGAACCATCACAGTACCAAGGGACTTTGCTCTTGTTGTTGCCACATAAGCCAATCCTCTGCTATATTTAAAGCTGGAGCCATTTGTACTTCCACTTTGTTTGGTGACTTGACCCTTGGGAACTTTGTGTGGTCTTGTTGTTTGATATTGTTGTTCCTCCTACACAGTTGCAAAGCCTTTCAGCTTCTTCAGTCCTTCCTTTAACTCCTTCATTGTAGTCCCCTTGCTCAGTCCAATGGTTGGCTGCAAGGATCTGATTCTCTTTGGTCCAGTCTCTGGATGGCCTTCCCTTCAGCCTCTTTTCCATTCTTTGTCCCTCTTTTTCCTTAAGACAGGAGCAATCCTGGGTTATTATATTTGAGGTGGGTATGATGTCCAATTTGAAAATAAAATTTAGAACGCTATTATCATTTTCAGTCTTTTGATATAAACCATATTTGAGATTCTTCTGAGGATACATGTAATGATTCAAAAAAAGAAAAAAGAAAGGAGAAAAACCTCTCTTGAGAGAACGAATCCCAGAGTTCACTGATTATTGAATCCCTTACTTTCTTATATAAGTAATTCATGTCACCTCTAATTCCTCCCCCCCTTTTTTTTCCAG
Seq C2 exon
AAAATCATTTCATATGTGCAAAGTGTGGGAAGGCCTTGGATGAAGACAGCCAGTACATTGTCCATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGAACAAGCTTAGCAATGTTATTCTTGAATCCCCCCATTGTGTACCTCACAAATGTAGTGAATGGGACAAATGCTTTTCCCAAAGATCCCATCTTAGTATTCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACTGAAAAAGGCATACTGAGAATTCATCAGAAAATTCATTCAGGAGAGAAATCTTACAAATATCATGAATGTGACAAGTGCTTTCCCAAAAAATCCCATCTTAGTATTCATCTGAGAATTCATAAAGGAGAGAAACCCTACAAATGTAGTGACTGTGACAAATGCTTTACTGAAAAACGCAAACTGAGAAGGCATCAGAAAATTCATACAGGAGAAAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTATACAAAAATACAGTCTTAGTGATCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTAACAAATGCTTTATACAAAAATCCAGTCTTAATAATCATCAGAGTATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGATAAACGCAATCTGAGAAGGCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGAGAAATGCTTTACTGACAAAGGCAGTCTGAGAAGGCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGAGAAATGCTATACTGACAAAGGCAGTCTGAGAAGGCATCAGAAAATTCATAAAGGAGAGAAACTTACAAATGCAGTGAATGTGACAAATGCTTTACTGAAAAAGGCAATCTGAGAATTCATCAGAAAATTCATTCAGGAGAGAAACCTTACAAATGTCATGAATGTGACAAGTGCTTTCCCAAAAAATCCCATCTTAGTATTCATCTGAGAATTCATAAAGGAGAGAAACCCTACAAATGTAGTGACTGTGACAAATGCTTTACTGAAAAACGCAAACTGAGAAGGCATCAGAAAATTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078496:ENSMUST00000105721:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3),PF0041217=LIM=PU(41.3=44.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0041217=LIM=PD(56.5=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGGAGGAATGGGAACGT
R:
AGCATTTGTCACATTCACTGCA
Band lengths:
349-1814
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types