BtaINT0165815 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003541 | ZNF614
Description
zinc finger protein 614 [Source:HGNC Symbol;Acc:HGNC:24722]
Coordinates
chr18:58180500-58181227:+
Coord C1 exon
chr18:58180500-58180641
Coord A exon
chr18:58180642-58181131
Coord C2 exon
chr18:58181132-58181227
Length
490 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTATCATTTCTCATGATCAGGAT
3' ss Score
8.32
Exon sequences
Seq C1 exon
ACTTTATTATTACAGGAATTGCTGACACTGGAAGATGTGGCTGTGGAGTTCAACTGGGAGGAGTGGCAGCTCCTGGATTCTGCTCAGAGAGACCTATACTGGGATGTGATGTTGGAGAACTATAACAATTTGGTGTCACTGG
Seq A exon
GTAAGGATGACTCCCAGTGTCATTTATGAGTGTCGAGTCACTGGACTTTTCTCCATCACCTGATGAAAGCTTTGTAGTCCCTGTGGTCTTCCAAAGAGTTAGATGTTTTTATTCCCTGTCTGGCTCCCAAGAGGTGTAATCTCCTGTACCCTGAAAGAGAACATTTGCTTTGCATACAAGAAATTTTGTTTCTAAAATGCAGTATTCGGCACAGGTGGAGGTAAGGGGAGAGGGAGGCTTAAGAGAAAGGGGGTATATATGTATCCACATAGGTGATTTCACGTTGTACTGCAGAAACTAACACAACATTGTAAAGCAATTATACTCCAATTAAAAAAGTAGAATCCAATAAAATGTGATATGCTTAATAGGAATCCAGTAAAGTTAAAAATTCAGTAAATGTTAAATAAATAAAATGCAGTATTTTCCCATCTTGACATACCATAACCCAGTTCTTGCATCTAAGTCTTTTATCATTTCTCATGATCAG
Seq C2 exon
GATATCAAGGTACCAAACCAGATATGCTTTCCAAGTTGGAACATGGAAGAGAACCATGCATAATAGAAAATGAAATGCGGAATAGAATTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003541:ENSBTAT00000004602:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=85.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACAGGAATTGCTGACACTGGA
R:
CTGGACAAATTCTATTCCGCATT
Band lengths:
230-720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development