HsaINT0187870 @ hg19
Intron Retention
Gene
ENSG00000142556 | ZNF614
Description
zinc finger protein 614 [Source:HGNC Symbol;Acc:24722]
Coordinates
chr19:52521261-52521747:-
Coord C1 exon
chr19:52521621-52521747
Coord A exon
chr19:52521357-52521620
Coord C2 exon
chr19:52521261-52521356
Length
264 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTGTCTTTCCTCATGAACAGGGT
3' ss Score
9.11
Exon sequences
Seq C1 exon
GAATCACTGACCCTGGAGGATGTGGCTGTGGAATTCAGCTGGGAGGAGTGGCAGCTCCTGGACACTGCTCAGAAGAACCTGTACCGGGATGTGATGGTGGAGAACTATAACCACCTAGTATCACTGG
Seq A exon
GTAAGAATAGTTTCCCTGTGTCACCTAGAGGTGCCTACAATGCCCAGACACCGTCCTATGCTCACCTAATCAAAGCTTTACAGTCACTGTGGTGTTTGGAAGAGTTACATTTTCAGTCCCCTCTCTGACCCCAAAGTGGTATAATCTCTTCTAAGACAGAATGCTTACTTTGAAATTGTTTTCTTCATCGAATGTATTATTTTTCCATCTTGACATACTGGACTCCAATTCAGGATGTTTGTGTTTGTCTTTCCTCATGAACAG
Seq C2 exon
GGTATCAAACTAGCAAACCAGATGTACTCTCCAAGTTGGCACATGGACAAGAACCATGGACAACAGATGCTAAAATTCAGAATAAAAATTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142556-ZNF614:NM_025040:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.424
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGACCCTGGAGGATGTG
R:
TCTGAATTTTAGCATCTGTTGTCCA
Band lengths:
205-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)