BtaINT0165878 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009242 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr11:13161554-13163397:-
Coord C1 exon
chr11:13162443-13163397
Coord A exon
chr11:13161659-13162442
Coord C2 exon
chr11:13161554-13161658
Length
784 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
ATTAGACTTTCTCTTTAAAGCTA
3' ss Score
6.9
Exon sequences
Seq C1 exon
GAACCTTTATTTCCATTTAATTTGGATGAATTTGTTACTGTGGATGAGGTTATAGAAGAAGTAAATCCTTTTCACGTCAAGCAGAATCCACTGAAGGGAAAAAGGAAAGAAGCTCTCAAAAATACCCCTTCCTCTGAACTGAACTTAAAGAAGAAGAAGGGAAAGATCTCTGCTCCTCGTGTGGTTGAGGGAGAGTTATCTTTTGTAACATTGGATGAGATTGGGGAAGAGGAAGATGCAGCTGCACAGCTAGCACAAGCTCTAGTCACTGTGGATGAAGTAATTGATGAAGATGACATAAACGTGGAAGACATGGTTAAAAATTCAAACTCACTTCTTACATTAGATGAGTTAATTGATCAAGATGATTGCATTTCTCACAGTGAAACTAAAGATGTTACTGTGCTGTCTGTGGCTGAAGAGCAAGATCTTCTCAAACAGGAACGCTTGGTAACTGTGGATGAAATTGGGGAAGTAGAAGAGCTACCTTTAAATGAGTCGGCAGATATCAGTTTTGGTGCTTTAAATACTAAAGGAGATGAGGGAAATACTGGAAGGGATTCTCTTGGGTTCATTTCTTCTCAGATGCCTGAAGACCCTTCTACTTTAGTTACTGTAGATGAAATACAGGATGACAGCAGTGATCTGCATTTAGTGACTTTAGATGAAGTAACTGAAGAGGATGAAGACTCTCTGGCAGATTTTAACAATCTTAAAGAAGAGCTTAATTTTGTTACTGTTGATGAAGTTGGAGAGGAAGAAGATGGAGACAATGATTTAAAAATTGAGTTAACACAGAGGAAAAATGACCATCCCACTGATAAGAGAGGTGATAGAAAAAAGAGAACTGTGGACAAAAAGAAGACAAAACTTGAAGCTCTGTCTCAAGTGGGCCCAGTAAATGAGAATGTTATGGAAGAAAATCCGAAAACCATGATTGAAAGACGTTCAGCAG
Seq A exon
GTAGATACTTAGAAGTGGTAATTTTTGTTTTGTGAGAGGACTGTATTTAAATTTTTTTTAATATATTTTATAGGATTACTGATATAATTGTGGCCAAGTGATACTTTCCAAAGAAATATGTTCAAGATTCACAAAGTTGTCTTAGTTCAGATATTATGCCTAAGTTACTGTATCTCAAGAAAAAAATAACAAAAACAGAAGGCAAACTAGGGTAGCCAGATTAGAATTGGAATGACAATGTTATATTTGTATTATTGAGAATAATACAGCTTTTAATAAGTAGAAGGCTATTTATATCTAACTGCCTCCTAGTTTTTGCTTAGACATAGAATTTAGAAAAATTTGTGAAGGTCCCATTTCACTTTTAAGTAATATTTTGATGGTATACAATGATAGGGCAGTTCACTTTTAGTACTTCAGAGAGAGCAAGATAATTTCCAGTACAGAAGTCTTAAGCGATTTAGCCAGACTAAGAGGGAAAATACTAGAAAGATCCCACAGACTTGTGGAACAAAATAGAAAAAAATGTTTGTAGGTTCTTTAAGAAAAGCAGGTAGGAAAGTGTAGTTTGGGTCAAGGTAAATGGGAAAATAAAAGGAGAATGCTTAGACTAATGCTGACTGTTTTAAAATAGGAGTCTCCTATTTTTTTATTAGAAATAGGTTTCCTTTCCAAATTTGTGTAATACTGTATTTTTTGTAAAGAAGTATTAAAGTTGTTATTCAGAATTAAAACTAATTTAAACACTGTTACTGTTGTAATAAATTAGACTTTCTCTTTAAAG
Seq C2 exon
CTACAGTGCCAACCAAGAGAGTTAGAATTGGAAAAATGCCACCATCAGAAAAAGTTGTTACAGTGGAACCAGTGAAAGATGAAGAGGCCTTCCAAATTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009242:ENSBTAT00000012184:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGATGACAGCAGTGATCTG
R:
AACTCTCTTGGTTGGCACTGT
Band lengths:
352-1136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development