MmuINT0178517 @ mm9
Intron Retention
Gene
ENSMUSG00000030016 | Zfml
Description
zinc finger, matrin-like [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83929841-83931779:+
Coord C1 exon
chr6:83929841-83929903
Coord A exon
chr6:83929904-83931677
Coord C2 exon
chr6:83931678-83931779
Length
1774 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
ATTAGGCTTTCTTTTTAAAGCTA
3' ss Score
6.17
Exon sequences
Seq C1 exon
GTCCAGGAAGTGAAACTGTTACACAAAAAGATCTGAAAACCATGCCTGAAAGACATTTGGCAG
Seq A exon
GTAGATACTTGAAAGTATTCATTTTTTCTGTTTCATGAGATTACATTTAAAACTATGAACACAGTGCCACAGTAGGAATAATGTCATTCTGTTGAAATTCTGTAAGGTGGCAGTTACAACCACTCCACAGAACTTTGTTTTCCACAGAAACAAGGTGTTGGTTGCACACATTTAGTTTACAGAACACAGGTTGTCCCAAGTTGTTAAACCTCAAGAAAGGATGTCAAAACTGGGAGACAAAGTGAACCAGCCAGTGTAGAGCTTCAGTGAACACATTGTGTTATGGATGGAGGAACAAGCTTTTAAAGAGGAGAATACTGTTCACATTACAGTGCCTCTCACTTTTAGCTTAAACTTAGGTTTAGGACAAGCAGGAGGACAAATTATTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTAAGATAAGGTCTCACTGTGTGAACCTTTTAGACCTGGAATGTAGACCAGGCAGCTTTGAACTCACAAAAATCAGCCTATCTCTGCTTCTGCTTTCTGGGTACTGGAATTAAATGTGTGAATAACCATACCTGGAAGATTTTGGTCTTTTGAGATGAGGTCTGACTCTGTAGTTCATGTTGGCCTAGAACTCAGAATATAGACTTGAACTCAGGATATTCTTCCTTCCCATGTGCCAGGATTACAGGTGAGAGTTACCACACTTGGCATAGCATAATATTTTGATGGTATGGCATAATGGAGCAGCTTGCTTGCTTATAGGACATGAGAGAGACCAAATTAATTTCCATTTAGAAAACTTTGAACTCAGTCGCCATAATATGTTACAAAATAAGTCACCCTGATGAGAAGGAATTCAAATAGTAGTTTATTTTGTTTCCTTAGATGTTATAAATGAAGCTATTTAATGTGTTAATAAATGTCTACTTTGTAAAAGTTAAAAAAAGCAAGCCAGGTAGTGGTAGTGTGGGCCTGTAAGCTCAGCACTCAGGGGGCTACTCAGGCAGTCCTCTGAGTTCAAGGCCTGCTTGGTCTATAGAGTCAGTTTCTGGACAGCCAGGGCTGTTTGTTATACAGAGAAACCCTGATTTAAGAAAAAAGAAAGGAAAGGAGAAGGAGAAAGAAGGAGAAGGAAGGAAGGAAGGGAGAGGGGGGGGGAGGGTGAGAGAGAGAGAATACCTTGAAATATTTAACTAAACTAAGAATGGAATATCAGGAACATCTTTTTGGATTGGCAACAATTCAGGGGAAAGTATAAAGCCATACTGTGAAAAGAATAGGAAGGGACAATTTTTCAGAACACAAATGGAAACATGTTATTCTAACTAAACTGCCTTTTAACATAGATTTCTATTTAGTGTTAAGTTTCTCTGCTGTGTGTGCTGGCACATGCCTGTAATCTAGCACTCAGCTTCAGCTACATAAGAAAGTCCCTGTGAGCCGGGCGGTGGTGGCCCATGCCTTTAATCCCAGCACATGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTATACAGAGAAACTCTGTCTCACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAGCAAAACAAACAACAACAGAACCTAACTAAAGAAAGACCCTGTCTCAGAAACACAAGGCAATCTCCCCAAATTTAGGTAGTTTTTTGCAACAAATATTAGAATTTCTAGATAGTTTAATATGCTAAATTTCAAGCAATTTAAATACTGTTAATGAAGCAATAAATTAGGCTTTCTTTTTAAAG
Seq C2 exon
CTAAAACGCCAATGAAGAGAGTTAGAATTGGGAAATCATCACCCTCACAAAAAGTGGCAGAACCAACAAAAGGCGAAGAGGCCTTCCAAATGAGTGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-Zfml:NM_001166371:22
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: