HsaINT0187953 @ hg38
Intron Retention
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71426460-71428651:+
Coord C1 exon
chr2:71426460-71427414
Coord A exon
chr2:71427415-71428546
Coord C2 exon
chr2:71428547-71428651
Length
1132 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
TTAGGACTTTCTTTTTAAAGCTA
3' ss Score
5.41
Exon sequences
Seq C1 exon
GAGCCATTATTTCCATTTAATTTGGATGAATTTGTTACTGTGGATGAGGTTATAGAAGAAGTGAATCCTTCTCAGGCCAAGCAGAATCCACTAAAGGGAAAAAGGAAAGAAACTCTCAAAAATGTTCCTTTCTCTGAACTTAACTTAAAGAAGAAAAAGGGGAAAACTTCCACTCCTCGTGGTGTTGAGGGAGAACTATCTTTTGTGACATTGGATGAGATTGGGGAAGAGGAAGATGCAGCTGCACATCTAGCACAAGCTCTAGTCACTGTGGATGAAGTAATTGATGAAGAAGAACTAAATATGGAAGAAATGGTAAAAAATTCAAATTCACTTTTTACATTAGATGAATTAATTGACCAAGATGATTGCATTTCCCACAGTGAACCTAAAGATGTTACTGTTCTGTCAGTGGCTGAAGAACAAGATCTCCTCAAACAGGAACGCTTGGTAACTGTGGATGAAATTGGAGAAGTGGAAGAGCTACCTTTGAATGAGTCAGCAGACATAACTTTTGCCACTTTAAATACTAAAGGAAATGAAGGAGATACTGTAAGGGATTCCATTGGCTTCATTTCTTCTCAGGTGCCCGAAGACCCTTCTACTTTAGTTACTGTAGATGAAATACAAGATGACAGCAGTGATTTGCATTTAGTGACTTTGGATGAAGTAACTGAAGAGGATGAAGACTCTCTGGCGGATTTTAACAACCTTAAAGAAGAGCTTAATTTTGTTACTGTTGATGAAGTTGGAGAGGAGGAAGATGGAGATAATGATTTAAAAGTTGAGTTAGCACAAAGCAAAAATGACCATCCCACAGATAAAAAAGGGAATAGAAAGAAGAGAGCTGTGGACACAAAAAAGACAAAACTTGAATCCTTGTCCCAAGTGGGTCCAGTAAATGAGAATGTTATGGAAGAAGATCTAAAAACCATGATTGAAAGACACTTAACAG
Seq A exon
GTAGATACTTGGAAGGGGTAGTCTTTCTGTTTTATGAGGGGATTACATTTAAAATTAATTTTAAAATACATGTTGTGGCATTACCAATAATGTCACCCAGTATTGATATTAGAGGCCAACAGACAGTTAAAGTCAACAATAAATTTTCCAAAGAAATGTGTACAAGTTTCACAGTTTTTTAAAGTTTTACAGCAGAACTTGCTCCAGGTTATGCTTCAAGAAAGGATGACAAAAAACAGAAAACAAACTGAAGTAGCCAAATTAGAATTGGAATGAAAATGATATATTTGTATTGTGGGAAAAAGACAACTTTTGATAAATAGAAGAACATTTACATCAGATTACCTCCCAGTTTTTGCTTAGACTTAGAATTAAGAACTATTTATAAAGGAACTATTTGATTTTAAAGTAATATTGTAATGATACAGAATAGTACGGCAGCTCACTTTCCGAACTTGAGGGAGATAAACATAATTTCCATTAAGAAAATCTTGAGGCCAAGTATTGTGGCTCACTCCCGTAATCTCAGCACTTTGGGAAGCCGAGGTGGGAGGATCGCTTGAGGCCAGGAGTGCGACACCAGTCTGGGCAGCCTAGCAAGACTCCGTCTCTACAAAAAATTAAAAAATGAGCCAGGCACGGTGGCATGCGTCTGTGGTCCCAGCTGCTTTGGAGACTGAGGCTAGAGGATCGCTTGAGCCCAGAAGGTCGAGGTTGTGGTGAGCAATGGTTGTGCCACTGCACTCCAACCTTGGTAACAGAGTGAGCCACTTTGTCTCCAAAAAGAAGAAAAAAAACCTGAAAGATTTAACTCAACTAAGAATAAAATACTAGGAAGGTCCCACAGGCTTATGGAACAAATTAGAAAAACATTTATGGACATCCTGGGAAAAGAAGTTAGAAAAGCATAGTTACTTGGAAAATGATAACTGGGAACAAAAGGAAATGCTTAGATTAAACTGATTATTTTAAAATAGAATTCTTCTATTTTATATTAGCAGTAGGCTTCCCTCCCAAATTTGGGTATTTTTTGCAAAAATGTATAATGTTGATTCAGACAGTATAATATGTTTAATTTAAAGCAATTTAAATACTGTTACTAGAGCAATAAATTAGGACTTTCTTTTTAAAG
Seq C2 exon
CTAAAACTCCAACCAAGAGAGTTAGAATTGGGAAAACTCTGCCATCAGAAAAAGCTGTTGTGACAGAACCAGCAAAAGGTGAAGAGGCCTTCCAGATGAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292:ENST00000264447:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.672 A=NA C2=0.994
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAAGACTCTCTGGCGGA
R:
ACCTTTTGCTGGTTCTGTCACA
Band lengths:
355-1487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains