BtaINT0165893 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016496 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:HGNC:31834]
Coordinates
chr5:32101476-32102396:+
Coord C1 exon
chr5:32101476-32101684
Coord A exon
chr5:32101685-32102304
Coord C2 exon
chr5:32102305-32102396
Length
620 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
TTCCTCTCTCCCCTCACCAGCTC
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTCACAATTTGGGTTTGCAGCAAAAATGCTTTCAGAACAGACAGCAGCCCTGGGGACAGGATGGGAGTCAATGAATGTCCAGGTGGATAGAGCAGAGCCCCAGGTGGAAAGGGGAAGCCAGGAAGAGGGGCCATGGAGAACAGCTCCAGGGCCATTGGAGCACCTATGCTGTGACCTTGAAGAGGAGCCACAGTCCCTTCAGGAGAAGG
Seq A exon
GTGAGAGCCCATAGGGTGTGTGTGGGAAGCACAATGCAGAGAATAATCTTCTAATCTCTATTGAAAAAGTAGAATTAAAAATCTCCCAATGGCCATGGACTGAGTGAACAGCACAGTTAGTACCAGGACTAGGCCACAGAAATAGAAAAAACTTACAGGCCCTAGTCAGAAAAATACAAGAAGCATCTGGATTCTGCAAACCATGTAACTGGGTTTCTCCCATTTCTTACATAATCACTCCCTCCACCTGTTACACGGTTAGTGGTAACAAATACGGGAGACAAAGGAAGTGACAGAAACACTGACTGCCACTGGAAAACACACCCAGTAAAATGCACTTTACAAGATGAAAATTACATTTGAATAATATAAATTCAAACCACAGCTAGTTTAATAGGAATGAATGACATAAATGCTCTACTAAAAACCACTCAGTACCCTTTCAGAACATTTGAGGGAAGGTCTCTTCTACTACAGTACATTTATGCATTTGAGTCTTACCAGTGGACATAGATATAGGGGAAAAATACGACGCTTAAGCCTCACTAAAATAGGTCCCAGGCTGTAACTGGAAAAAGATGGATGCTCCATCTCTAATGGTTCCTCTCTCCCCTCACCAG
Seq C2 exon
CTCAGTCCACTCCCTGGGTTCCTGCCATTCCCCAAGAAGGGAGCACTGGAGACTGGGAGATGGCAGCTGCACTTCTTGCGGCGGGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016496:ENSBTAT00000021929:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=NA C2=0.677
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAATTTGGGTTTGCAGCA
R:
GATCCCGCCGCAAGAAGTG
Band lengths:
297-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]