MmuINT0179629 @ mm9
Intron Retention
Gene
ENSMUSG00000022987 | Zfp641
Description
zinc finger protein 641 [Source:MGI Symbol;Acc:MGI:2442788]
Coordinates
chr15:98123317-98124259:-
Coord C1 exon
chr15:98124051-98124259
Coord A exon
chr15:98123409-98124050
Coord C2 exon
chr15:98123317-98123408
Length
642 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
TTCCTCTCTTCCCTCACCAGCAA
3' ss Score
8.63
Exon sequences
Seq C1 exon
GTCACAGTGTGTGCTTGCTGCAGACATGCTTTCGGAACAGGCTGTAGGCCTGGGCACGGGATGGGAGCCAATGAATACACAGCTGGATGCGGCAGAACTCCAGTCAGAAAGAGGGACCCGGGAAGAGGGCTCGTGGAGAACAGCACCAAGGCCGCTGGAGCACCTTCACTGTGGTCTTGAAGACGAGCCACTGTCCCTTCAGGAGAAGG
Seq A exon
GTGAGAGCACATAGTGGGGTGGGGATTGGAAGCACTAGAAGTCTTCTAGTCTCTGCTCCAAAAGAGGCATTAAAAATTCCTAACCTGGCTAGGTATGGTGGCTCAAACTTGTAATCACATTTCTTGGAGGATTGCCATGAGTTTCAGGCCAGCCTGGGCTACAGAGCATGGCCCTGTCTCAAACAACAATAGTTAATTTCTAACTTCCACCAACTGAAGTATGTACCAAATACCAGGTTCAGTCTGTTTACCCTGGGCCCTGCTGTCCAGAGGCCCTGCATCTTCCAAACTATGTGCAGAGGCTCCTTTTTCTCACACAGTCATTCCTCCAACAGGCAAGCACGTCATTAATGGTGTTGAATGTGGGAGACCCAGGAAGTACTGGGAGACTCATTACTGTTGGAGACCACAGTCAGTAACATATATTTCACATGATGAGCATCAATCAGTACCATCCAACCTAAAGCCAGTCTTAACTCAATGTCCCCAGATCCTTGCAGAACTGTTTGAGTGGAGGCCTCTACATCTCTATATATGTGTTTGAGTTTTACCAGTGAGCACAGATGGAGAAGATAAAAAAAAAAGTGCATCCTGGGAAAGATGGGTAGTTCATCTCTGATGGTTCCTCTCTTCCCTCACCAG
Seq C2 exon
CAACTTCTGTTCCCTGGGTTCCGGCCGTTCCCCAGGAGGGGAACACTGGAGACTGGGAAATGGCAGCCGCACTTCTTGCAGCCGGATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022987-Zfp641:NM_173769:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=NA C2=0.871
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PU(3.1=3.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTGTGTGCTTGCTGC
R:
GGATCCGGCTGCAAGAAGTG
Band lengths:
296-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: