RnoINT0168533 @ rn6
Intron Retention
Gene
ENSRNOG00000032447 | Zfp641
Description
zinc finger protein 641 [Source:RGD Symbol;Acc:1310412]
Coordinates
chr7:139904487-139905444:-
Coord C1 exon
chr7:139905236-139905444
Coord A exon
chr7:139904579-139905235
Coord C2 exon
chr7:139904487-139904578
Length
657 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
CTCCTCTCTCCCCTCACCAGCAC
3' ss Score
8.11
Exon sequences
Seq C1 exon
GTCCTAGCGGGCACTCACTGCAGACATGCTTTCGGAACAGAGCGTAGCCCCGGGTGCAGGATGGGAGCCAATGAGTGCACAGCTGGATGCAGCGGAACCCGGGTCAGAAAGAGGAGCCCGGGAAGAGGGCCCGTGGAGAACAGCACCAAGGCCGCTGGAGCACCTTCACAGTGGTCTTGAAGACGAGACACTGTCCCTTCAGGAGAAGG
Seq A exon
GTAAGAGCACATGGGGGAGTGGGGGGGGGGTTGGGAAGCACTAGAAGTCTCTGTCTCTGCTCAAAACGTGGCATTAAAAATCCCTACATGCAGTGGCTCACACTTGTAAGTTCAATCCTTGGAGGATAGTTAGGAGGATTGCCATGAGTCCCAGGCCAGCCTGGGCTACATAACACGGCGCTGTCTCGAACAATAATAGCAACGTCCAATTGCCACTGCCTGAAGTCTGTACCAAACACCAGGTTCAGTCTTTTATTCCTGGGCCCTGCTGTCCAGTAAGCCATGAGGTCCTGCATCTTCCAAACTGTGTAAACAAGCCTCTTCTGTTTCTCACACGGTCATTCCTCCTACGGGCAGGTGTGTCATTAATGGTATTCAACATGGGAGACGCACGGAGTGCTGGGAGACCCATGACAGTTGGAGGACTCGGTCAATGATATGTACACTTGACGAGAGGAGTGTCAAGCAGTGCCCATCCAAACTACAGCTATTCTAACTAAATGTCCCTAGATCCTTGTGAAACTCTGTCAGTGGGGGCCTCTATGTGCTTTTGAGTTGTACCCGTGAACGCAGATTGAGAAGAGAAATGGGGCCCAGTGCATCCTGGGGAAGAAGATGGGTAGTTCATCTCTGACGGCTCCTCTCTCCCCTCACCAG
Seq C2 exon
CACCGTCTGCTCCCTGGGTTCCTGCCGTCCCCCAGGAGGGGGACACTGGAGACTGGGAAATGGCAGCCGCACTTCTTGCAGCTGGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032447:ENSRNOT00000045473:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAGCGGGCACTCACTG
R:
GGACCCAGCTGCAAGAAGTG
Band lengths:
297-954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]