HsaINT1047598 @ hg38
Intron Retention
Gene
ENSG00000167528 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:HGNC:31834]
Coordinates
chr12:48347252-48348115:-
Coord C1 exon
chr12:48347907-48348115
Coord A exon
chr12:48347344-48347906
Coord C2 exon
chr12:48347252-48347343
Length
563 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
TTCTTCTCTCTCCTTATCAGCTC
3' ss Score
9.15
Exon sequences
Seq C1 exon
GTCACAATTTGGGTCTGCAGCAGAAATGCTTTCAGAACAGACAGCAGCGCTGGGGACAGGATGGGAATCAATGAATGTACAGCTGGATGGAGCAGAGCCCCAGGTGGAAAGGGGAAGCCAGGAAGAGCGGCCATGGAGAACAGTACCAGGACCTCTGGAGCACCTGTGCTGTGACCTTGAAGAGGAGCCACAGTCCCTTCAGGAGAAGG
Seq A exon
GTGAGAACTCACAGAGTGTGTGGGAAGCACAGTGCATAGTCTCCTAATATTTATTCCAAAAGTAGGGTTAAAAATCTCCAAATTGCCATGGACTAAATAGCATAACCTGTACCAGGACCAGCCCATTCTTTCTCAGCCCTGGTCACAGGTACAGAATAGGCTCCTGAATTCAGCAAACCATGCAACTGGGCTTCTCTTGTTTCTTCATAATTACTCCCTCCACATGCAAATGCATAATTAGTGATACTGAATGAGGGAGATGAAGGAAGTGACAGCAACCTGATTACTGTTGGATAACCCACTCAGTAAGATGTAATTTACTAGATGAAAATTACATTCAAGTACTGTAAATTCAAACTATAGCTAGTCTAACTAAAAGCCATCTGATACCCTTTCAGAACATTTTGAGTGATGGCCTTCTCATCTACATTTATGCATTTGAGTTTTACCAATGGGCATAGATACAGAAGTTGTGACCCTTAAGCCTCTCTAAAATGGGGCCCAGGCCCCATTGAGAAAGGGTAGATCGTTATTCTCTAATGTTTCTTCTCTCTCCTTATCAG
Seq C2 exon
CTCAGTCTGCTCCCTGGGTTCCTGCAATTCCCCAGGAGGGGAACACTGGAGACTGGGAGATGGCAGCTGCACTTCTTGCGGCTGGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167528:ENST00000544117:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=NA C2=0.670
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAATTTGGGTCTGCAGCA
R:
CTGTGATCCAGCCGCAAGAAG
Band lengths:
300-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains