BtaINT0165938 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000803 | ZNF667
Description
Bos taurus zinc finger protein 667 (ZNF667), mRNA. [Source:RefSeq mRNA;Acc:NM_001102078]
Coordinates
chr18:63879595-63883978:+
Coord C1 exon
chr18:63879595-63879758
Coord A exon
chr18:63879759-63883887
Coord C2 exon
chr18:63883888-63883978
Length
4129 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CGGCTTCTCTTCTCCCCCAGGTT
3' ss Score
11.39
Exon sequences
Seq C1 exon
CTGTGCCGAGTTCCTTGGAGGAAATTACTTCGTGGACAAGAATCACACACCTTCAATTCACAGTGTGTGACGAGCACAAGCAGCTATGAGAAACCACAGGATGGACGCCATGCCACTTCCTGGAGCAGTCCACTTGACTTGAGGAACCAGAAAGGAAGAATCTG
Seq A exon
GTAAGTGACTTTTAAATACAGTTTTTATATTAACACAGATTTATCATGATGTGGAATGCAAAAGTCATATGGTTGTTGCAGGAAAAAAAAAACAAAAAAACAGAAGACTTCAGGAGTTTTATGTGTTGGGCAGCTGCTTTGGGGTGTTCTCAGGCTGGTGAGTTAGACATTAGCCCTCCTTTGCTGTGCAGGGATGTTAGTCAGAAGCGCTTAGAGGCCGCATGGCAGTGGAGTGCTGGAGCTGGCCCACCCCGGCTCACGCAAGCCCGTGGGGCACACGTCTCCCCAGCCTCAGGTTCAGTGGCATCAGTTCGATATCTTATAGCACACTCTGATGGCAGTCTCTACACCATAGAAATCGGCAGACATTGCAGACTACAGCAGCGTGTACATGACCTTCCTGCAGCAACCATAAGTTCGTTCTCTGTGAGTCTCTTTCTGTTTTGTAAGTAACTTCTTTTGTGTCATTTCTTTTTAGATTCCACGTGTAAGGGATGTCAAACGGTATTCCTCCTTCTCTGTCTGACTTCACTGAGTAGAACACTCTCTAGGTCCGTCCGTGTTGCTGCGGATGGCATTGTCTCGTTTTTCTAATGGCCGAGTGTACTCTACTGTATGTGTGTCCACATCTTTGTCCGTTGCTCTGTCGGTGCACATGTAGGTTGCCTCCATGTCTTGGCTGTTGTGAGCACTGCTGCAGTGAACGTTGGGTGCATGCCTCCTTTCAGGTCATGTTCTTCTCCAGATCCATGCCCAGGCCTGGGGTTGCAGGGCCACATGGTAGCTGTACTTTTAGTTTTTTAAGGAACCTCCATACTGTTCTCCATAGCGGCTGCACCAGTTTACATTCCCACCCATAATGTAGGAGGGTTCTCTTCTCTCCACCCTCTCTTTAGCATTTATTGTTTGTGGATTTTTGATGATGGCCATTCTGAGTGGTGTGAAGTGATACCTCACTGTAGTTATGATTTGCATTTCTCTAATAATTAGCTATGTTGAACATCTTTCATGTGCCAATTGGCCATCTGTGTGTCGTCTTTGGAGAAATGTCTGCTTAGGTCTTCTGCCCACTTTTTGAGTGGGTTGTTTGTTTTGATGCTGTTAAGTATCATAGTTCCGTTCAGTTCACTCCCTCAGTCGTGTCTTGACTCTTTGCAACCCCATGAATCGCAGCACGCCAGGCCTCCTTGTCCATCACCAACTCCCAGAGTCCACCCAAAGCCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGTCATCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATTAGGGTCTTTTCCAGTGAGTCAGCTCTTCGTGTCAGGTGGCCAAAGGATTGGAGTTTCAGCTTCAACATCAGTCCTTCCAATGAACACTCAGGACTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGACTTGTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGCACTTAGCTTTCTTTATAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGCTTTCACTAGACAGAACTTTGTTGACAAAGTAATGTCTCTGCTTTTTATTATGGTGTCTAGGTTGGTCATAATTTTGCTTCCAAGGAGCAAGTGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTTGAGACCCCAAAATAAAGTCTGTCACTGTTTCCACTGTTTCCCCATCTATTTGACATGAAGTGATGGGACCAGATGCCATGATCTTAGTTTTCTGAATGTTAAGTATCATAGCTGTTTGTAAATTTTGGAGACTAATCCCTTACCAGTCACATTGATACAGATATTTTCTCCCAATCTGTGGGCTGTCTTTTTGTTTTTTGTTTCCTTTGCTGTGCAAAAGCTTTTGAGTTTGAGTAGGTCCCATTCCTGGAGAAGGCAATGGCAACCCACTGCAGTATTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTTGCTAAGAGTTGGACACAACTGAGTAACTTCACTTTGACTTTTCACTTTCATGCGTTGGAGAAGGAAATGGCAGCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAACGACTTAGCAGCAGCAGGTCCCATTCCATTTGTTTTTGTTTGTTTTTATTTCCATTTTTTTGTGAGATGAATTGAAAAGATATTGCTGTGGTTATGTGAGTGTGTTCTGCCTATGTTTTCCTATAGGAGGTTTATAGTATTCAGTCTCACGTTTAGGTCTTTTTTGAGCTTATTTTTGTGTATGGAGTTAAAGAATGATCTAGTTTCTTTTTTTTTTTTTTTTTTTTACATATGACTGTCTAGTTTTCCAAGCACCATTTGTTGAAGAGACTGTCTTTCCAACATTGTGTAGTCTTATTAATAATACATTTTAAAACTCAACACAGTACATCTGACATATTACCTTTTCAACTTATAATCAATATAAACAATTACCCATGGGATTTTTTACATTCTATTTTTTTTCATACTAGGTCTTTAAAATCATGTATTTTATGGTTATGTATTTTATGGTTAGAGTGCACCTCAATCCAGACACTTAATTTTTATTGGAGATATTTGATCTATATTTAAATTTTGTAAAATTTATTATTGGAGGGTGGTCCCTGTTGGCCTAGTGGTTAGGATTCTGGGCTTTCACTGCTGTGGCCTGGGTTCCATTCCTGGTTGGGGGGCTGAGATACTCCACAAGCCACATGGCATGGCCCAAAGAAACAAACCCAAACTGTTCCAGACATACTTAAAAGCTTTACAGTAACTGAACTAAGGATCAGTTTTTAATCTTAGATTAGTGATAAATTGTAATTTGATGATTCTAGTAGTTATCATTTTTATAGTTTTAATAATAAATGAATTGAAATAAAATAAAATGAAACAGTTTCTTATTTCCAGAACTCAGTGTCCGCTGGTATTCATGTTGGACGAGACAGGTACAGAGTGACGGGGTGATAGAGGGCCTCCCTTGGAGGTGATTCTTGACATCTCAGCTCTTACTCTCTCACCCTGGTGCACACCATTGAGGTTTCTCTTCCAGATTTCTGCGCACCTGTCTAATGAGCCCCTTCTGCAGCTCTTGCTTCCTCCTTCATACCCCACCAACACACGTTCATAGTATTGGCCACATAGCCACCAAGAAAAATTTTTGTTAAATGTTAAGTCAGTCACATCATTCCTTTACTCAACTACCATCCCTCCTCACACCTTATCACACTTAGATCAGTTCCATACTGCTTGTCACCCCCTTCATGACCCGGCCCCTCCTGACCCCAGTCACCTCAGGCTCACCATTTCCCCGCTCTCTCATGCTGCTTCCACTTACCATCCTCTGCCCTCCATACGCTGGCATGTGCCCGCCGCAGGCCCACCATCTCCCCGCTCTCCCACGGTGCTTCTGCTCACCTGCATTCTCTCTGTCCTCCACACGCCCAGCGTGTGCCTGCTGCAGGGCTCTTGCACCTGCTGTACCTCTACCCAGAATGTCTTTCTCCCCGTGCCCAGGTGACTCATGCGTGTGCTGCAGTCACACCTCGGCTCCGGGTGGCCTCTTCTGAGAGGCCTCCCCCCCGCCTGCCCCTCCTTCCCTGCTCAGGTCCAGTTTCCTTCACAGCAGGGATCGCGGCTCACGCTGGACTCTGTGTGGGCCTGTCCTCCCTGCTGAAACGTAAGGGACCGAGAGCAGGTGCGTCTCTGCTCTGACTCTGCTCCCCCGCCAGGCCCTGGGACAGCTCCTGGCACGTGGCAGGCACGCCACAGCTACTTGTCAGCTGAAGAGCAGGTGTCTGCCCCTTTCACTGTCTCCTGACCTGGCGCCTCCTGTGATCTCAGGAGTAGACGGTGTTGGCTGCAGCTTCTCCCTGGTGCTGAGAAAGGGCAGCAATGTTTCAGACAATGCTCTGACTTACCCGGTGTGTGTGTGTGACCAAGGTGTGGGCCTGGAGGCTGTGGGCCCTCCCGATGGCGCAGGCAGTCTCACGGCTTCTCTTCTCCCCCAG
Seq C2 exon
GTTCACCTTCTCAGTGCTCTTCCCTCCTCCAGCTGTGAGCCCTAAGACAGAGGAGAGGATGCCTGCGGCTCGGGGGAAGTCCAAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000803:ENSBTAT00000001064:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.515
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development