HsaINT0188050 @ hg19
Intron Retention
Gene
ENSG00000198046 | ZNF667
Description
zinc finger protein 667 [Source:HGNC Symbol;Acc:28854]
Coordinates
chr19:56973707-56983556:-
Coord C1 exon
chr19:56983068-56983556
Coord A exon
chr19:56973799-56983067
Coord C2 exon
chr19:56973707-56973798
Length
9269 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
GACCTGTCTTCTCCCCACAGCCC
3' ss Score
11.89
Exon sequences
Seq C1 exon
TAGTGCCGAGTTCCTTGAAGAAAATTATTTTATGGACAATGTATGAGTCTGTTTTCGTGCTGCTGATAAAGACATACCCAGACTCACAGTTCTACGTGGCTGGGGAGGCCTCACAATCGTGATGGAAGGTGAAAGACACGTCTTACATGGCCACAGGGAGAATGAGAGTCCCTGTACAGAACCATCAGATCACATGAGACTTACTCACTGCCATGAGAACAGCATGGGGGAAACCGCCCCCATGATTCAGTTATCTCCCACCGGGTCCCTCCCACAACACGTGGAAATTATGGGAGCTATAATTCAAGATGAGATTTGAGTGGGGACACAGCCAGACCATATCAGACAAGAATCATCTTCTCAAATTTGGGGTGCGTGGCTGAGTGCACACACCTGTGAAAACTGCGGGATGAATGCATTACAACTTCCTGGAACAAGTCATTTTACCTAAGTAATTGGAAGGGGAAAGCCAACTGATCTGCTTATCTG
Seq A exon
GTAAATCATTTAAAACATGATTTTTACATTAACACAAACCCAGATTTATTATGAAGTAATATGCACAAATGAACGTGTTTCAAAACAAGAAATCAAAAGAGTTTTCTGTTATGGGCAGCTGCTTTGGGATATATCTCAAACCATAGAAATAGGCATTAGCCCTCCTGTACTCTTCAGGGATATCTGCCCAAAGTTTAAGAATTCCCAGGCAAAGAATAGGGCTTTGTTCTCAAAGGCCCTGCAGCAGTGGTGTGCTGGAGCTGGCTCACCCAAGCCATTCAGCCCCATGCCAGGTGACATCAGTTCAATAGCTTACAACCTGCTGTGGTGGGAGTGTGTATTAGTCTGTTCTCACACTGCTATAAAGAAATACCTGAGACTGGTAATTTTTAAAGAAAAGTTTAATTGGCCCACGGTTCTGCAGGTTGTACAGGAAACATAGCAGCTTCAGGGAGGCATCAGGAAACTTTTACTCATGGCAGAAGGCAAAGTGGGAGGAGGTGTCTTACATGGTGGGAGCAGGAGAAAGAGGCAGGGGGGGTGGGGCTACACACTTCTAAACAACTGGATCTCGTGAGAACTCTTATCACGGGAACAGCACCAAAGGGATGGTGCTCAACTATTCACGAAGGATCCACCCCCAAGATCCAGTCACCTCCCACCAGGTCCCACTTCCAACATTGGGGATTACAATTAAACATGGGATTTGGATGGGGACACAGATCCAAACCATATCAGAGTATTTACTCCATGGAAGTTGTAAACACTATAAATCACCCCTGCAGCAAGCTGCTTATTAAACATTCCCCAGCACACCGTTGTCCTAGGGTCTAACACAGCCCAGAATTCAGGTGTCCAGGATTCAGGGCAGGCCTCTTGGTCCCCATCTCTGTACGAAGGAAACCTCGCTCAGAAAAGTCAGAATCGAAGGCCAGTCTGCTCAGTTCGTCACCGAGCCCTCGCTCCTCAGTCTTAACATGATATGCTCAAATTTTCCCCAACTCCTGTGGCCACTCTACTATGACAGAAACATACATATGGGGATGTTTTCCGGAAGCATTTCACCACACCGATGCCTCCCGTGCCCTGCCAGGGTGGATAGTGGACTCCTGCCATGTGTGAGGAGTGCAGAGTGTGCGGCTTGTGGATAGGGCCTCAAATCCAGGCTCCATCAGTTAAAGCTCTGTGACAACAGGCGGGTCATCGTCCCTCTCTCATCCCCGCGATGGAAGATGAGGACCCTGGGTGGTTGATTTGCCATTCAAGGTTAAAGGAGATGGTGTGATGCATAGAAAGGAGCCAGCACAGCTTTCATTCTCATCGTCATTAACTGAGGAGGTGACGCTGCTGCCCAGGCATGGAGCACATTCAGCACACACACCTGAGCACGTGCATAGAGCATGTGGGCTAAGGACGGTCAATGCGACCTTTTCCCAAACTCACATCCCACAGAACTGGCCCCACCTGGCACTTGTAACCTCAACAGCAGTGAGGGTAAATAGAGTTTACCTTAACGGAGCACTGACTGATATGATCTCATCTCATCCTCCAGCAGCCCTTTGTCCTCCCTTTGCAGATGTAAAGGAGGGAGGTAAAGACCCAGCAAGGTTCAGTAACTTGCCCAAGGTCACACAGCTGCACACATGAGAACATTGGTCAATGCATTGTCCGGTGGAGGACAAGAGATAAAGCCAGAAGGCAAATGTGCTCACAATGGAATGTGTTTCCGCTGTGAAGAAGTGGCACCTGATACATGTGAAGCATACCCCTACCCCGGTTTAGTGGGTGAGGGAAGGCTCCTTGAAAAAGTGTTGGTAAAGAAAGTTAATATTTATTACAAAGCCATTCAGTCATTCAGTTAGCAAACACTTAAGCCCTTTCCGTGTGCTGGATGCTGGTCTAAGGCACTTGGAATACAGAGTTGCCTGTCCTCAGGACGGTTGACAGTAAGCATAATAAGCAAATTCTGCAGCGAGTTACACCACGATAAGAGCTGCTGAAAAAAAATATCTGAACCAGCCGTGAAGGGTGGTGGGGGGCAGCTTGCATTATTAAATAGAATGGTTAGTGAGGCTTGCTGAGAAGGTGAGGTTTGAGCAGACTGAAGGAAGTGAGGTGGGGCTGTGGCAGCCCCTTCAGGGACTAGCAGGGAGGCACTGGCATGGGGGTGGGGGTGTAGGACCCAAACGTGATTCTTCATTCTTACAACTCCCTCCAGAAGTAGGTTCTGTATTGTCCCCAATTGAGAGGTGAGGAAACTGTGGCACAGAGAGGTTCAGTGGCTTGCCCAGGGTAACACAGCTGATAGGAACACTTGCCACCCTCAGTCTGACCCCAGAGTGATGTGTTTACCACCACTGGGGGCCGCCTCACCCTTCCCTCTGACCCTGGCTAAAACAAGGCAGGACCCTGAGCTTCCTCAGCATGAGGGAGCTCTGGATGTGCGTGCGTGGGTGTGTGTGCACGTGTGCAAGAGGGAGGCAGGCAGGGCTGATGTTTCAGCGCTCCTTTCTGCCTCTTGGAGTGGCCTCACAGGCCGGCTTCAGCGATCACCAGCCGACCTCTTCATCTCACCCTAGCCCTGTAATTCCCCTGAATTACAGATGTTTTCAGCACCAGGTCACTGACAAAAGAAGCCCATTTATTGGGCATGAGGACTGGAAGGAAATAGTGGAAGGGTCACTGTGTTCATTTCCTCTTGCTGCTGTGACAAATTGCCGCAAACTTGATGGCTTCAAGCTACACTCATTTATTCTCTTACAGTCCTGAAAGGCAGAGCTACGAAGCCATGGCAGCAGGTGCTCCTTCATCTTCAAGGCCAGCAGCATAGCTTCCATCTTGCAATTTCTTTTTCTGTCTGACTCTGATCCTCCTGCCTCCGTTTTATAAAGAGGACCTTTGTAATTATGTTGAGCCCACTTGGGCAATCCAGGATTGTGCTATTGAGAAATAACTATTTAGCCTTTAGCCTGTTTCCTGGCATAAAACTCCTGAAATCTTACAATTTCTAAAGTGATGTCTGTGAACCCAAAATATCGGAGACAAGTCTCAGTCAATTTAGAAAGTTTATTTTGCCAAGGCTAAGGACACACCTGTGACACAGCCTCAGGAGGTCCTGACATGTGCCCAAGGTGGTCGGGGCACAGCTAGGTTTTATATGTTTTTGGGAGACATGAGACATCAGCCAGTATGTGTGAGATGTACGTTGGTTTGGTCCAGAAAGGTGGGACAACTCGAAGCAAGGGCCCTGCCTTTCAGGTCATAGGTAGATAAGAGACAAACAGTTGCATTCCTTCAAGTCTCTGATGAGCCTTTCACTGAACACACAGTTTACATGTGACAGGAGGGTAGAGGAGTAGTCACTTATGCCTTGGTCTGGCTTAGTGAAATAGGGCAAAGGGAGCAATCAGGTATGCATTTATCTCATGAGTTCTGTGTGTCCTCTGTCCAAAAAGAATTTTCTTTTGGGCATATTGTGAGGGAGGTACGTGGTTAGTAATAAAATGGGAAACAGGTTTGCCTGAAGCAGTTCCCGAAGTGCTGGGATTACAGGTGTGAGGCACCATGCCCTTTTCTTTTACATGTCTTTTGTATGCTAATGAGATGGCTGGTGGCTGGCAGCCCCTGGGTAGCTTCAGGATAGGGTTGGTCACCAGGAAGACCAAGGCAGGACTAGACAGTTGGGACATTGAGCTCCACCCTTCAACCTCTGGGGAGGGGAGAAAGACTAAAGGTTAAGTTGATCACCAAGGGCCAGTAGTTTAATCTTGCCTGTGTAATGAAGCCACCATAAAAACTCAGAAGGACAGGGTTTGAAGAGCTTCTGGATAGCTGAACACATGGAGGTTCCTGGAGGGTTCCCAAGGAAGGCATGGAAGCTCCACACCACCTCACACATACCTTGTATTTCTACACATTTCTTTCTCTGTATTCTTCGGAATAGCCTTCATAATCAACCAGTAAATGTCAGTATTTGCCTGAGTTCTGTAAGCTGCTTTAGCAAATTATTAATAATTGAACCCAAAAGGGGATTGTGGGAACCCCAGCTTAAAGCCAGTCAGTCAAACATTCCTGAAGTCCAGACTTGCAACTGGTATCTGAAGGTGGGGCAGGTGGGGCAGTCTTGGGGGCTGAGACCTCAAGCTCTGGGATCTGATTCTGTCCCCAGGAACATAGTGTCAGAATTGAGTTGGAGGACACCCAGCTGGGGCCGCTGCAGAAATGATTGCTTGCTTGGTGTGTGGAAAACTCCTCACACATGTGGTCATGGATTGTTGTGGTGTGACAGCAGAGGAAAAATGGTTTGTGTGTTTTCCATTTTCAGGATAATTTCCCCCGCCCCCAAGATCCTTAACTTCATCACATCTGCAAAGTTCCTTTTGCTGTGTAAGGTGCCATATTCATGGGTTCTGGAGATTAGGATGTCCATATCTTTGGGGGGGTGGCCATAACTCTGGTCTACCACAGTCACTAATGCCCACAGTGCCCTCATTTCCCCCCCACCCCATTCCCAGGCAGATGAAGTCAAGTATTCCCCTTAGCATGATGTGGCCGGCATGGCACACAGTGCTAATTAGAGGCCCCTCCTGGACCATGGCTCACCTGCATGGGACCCCGCCCCTTCTTGCCCAGTGAGTGTTGCTGGAAAAGAGGGTCCCAATCCAGACCATAAGAGAGGGTTCTTGGATCTTGCACAGGAAGGAATTCAAGGTGAGTCACAGAGCACAGTGAAAGAAGCAAGTTTATTGGAAACTACCCTGTTATAGAGTAGGGTGTTCTCAGAAAGCAGGAGAAGGAATGGGAAACTGTAAGGAGCTGTCATTAAACCTGGAATGTGCAGATGCACTCACTAAAGGTAGGGCTGTTTGTGCTATCAATGACCATTCATCCTTCAGCCTAAGCCTGGTCATTGATGTTATCTCTGAGTAAAGTGGGCTGCACTCTCAGGACATCTGGACATTCTGCAGGCTTGGTGGGAGATGTTCTGTGTGTCTATAAATTTTCTGTAATTGTAATAGGTGGTCAGCTCAGGATGTGGCTACTTTCATACTGTAAGCATTAACCTTATAGCAGGGGCCTTGTGAGCGCCTAGCTACTCACTTTAAGACAGAGTCACTCTAGTCATGTTTTATTAAACCAGAGGCCTGGTAACCAGGGGTCCCTCTAACAAGAGCACCAGAGAAGTGGGGTGTGGCTCAGGGCACCATCCTGAGGGGCTGGGAAACCACACCTCCAGCTGCCTCCCATTGGGGCCAGGACATTGATCATGTGCCCACCTCAACTCCATCTGTTGCAGAATGACTGTTCGCTGGATCCTCATTCTAAGGCTGATACAGCTGAGGGGTGTGATAGAGTGGGGGTTACCTCTTACTGGCTTATGTTTCGGAGTCTGCAGGGCCACCTCCCAGGTTCCAGCATTCTCGAGGGCCTCCCAGGACCCAACCTGTAGTCATGCTCACAGCTAATGATTTATTACAGCCAAAAAATGCAGAGCAGTATCAGCAAAGGGAAGGGTGCACAGAGCAGAGCCTGGGGAAGCCAGGGCCAGGCTCCCTGGAGTCCTCTCCCAGTGCAGTCCTGAGTGACATACTAATTCCCTTAGTAACGAGTTAGAACAACACATGCGAGGTGCTGTCTACACAGCATGCCCATTAGAGACTCAGTGTCCACATTTGTTATTGTGAGCTGGTTACGTCGGCATTCTCTGGTTGGCAGATAACAAAATTGCAGACTCCCAGGAGGAAAGCAGGGGTTCAACATAAGGCGTAAATTGTATGCTCCCTGCACCACACCATGAAGCTGAAGGTATTCTTAACAGTCAGGAAAAGTTTTATATCCGTGTAGGGAATGGTCTCCCAGCCAGGTCCTTAGACGCCAGCCTGGGGCTGACCCTGCACACAGGCCTCTTGGGAGAGCAGCCTCAAGCCTGCCCTGCTGATCTTCTCTGCTCAGCTTGTTTCCTCTGACATGGGCAGAGGGGAGGGTGCCACACAGTAGGGTTAAGAGCCAGGCATTTGGGGCAAATGTCTAGGTTTGAACCCTGGCTCTGCCACTGGTCTACCTTATGACGTTGGGCAAGTGATTCCTCCCTCTCTGTGCTTCCACCTTCCCATCTGGAAAACGGCGTCAGAACTGGACTTGCCACCAGATGTGAGAATTGAAATGATAATCCTCAGTGTTGCTTAGCACATGGAACATTTATTCATCTTGTTAATAATTCATCTTAGTATTCGTATTCTTACTACAACTTCATCCTACAAAGAGAGACATGTAATAATCCAAGCATTCTTCTGCCTAGCTTCTCTTAAATAGGATAAGGCCATCTTAGGATCCATGTTTTGTATCAAAACATATCCATTACCTAACTCTGAACTCAAGCCTGATGGCCTTGGATTTATCTTCTTCTACCTCCACCCCTACGGGGACGAAACAAACATCTGTAGAGGGAACATCCATTATTTCCATTTTCCAGGCTGTGTCCTGCTGTACTTTTTTCATTACAAAGTCACAAAAAGCTTTTGGGGATATTTCTGCTGTTGTTGGCAGCAGGGTATGACGATGGCATTCTTTGGAGGCGTGTGCTGGAACATTTAGGGATGAACTGTCATTCTACAACTTTCAGACAACTGCCTTTTTATAAAAAAGGGTAGGAAAAATGTTAACATTTGGTGAAGAGTAATTAGGCATTCATTGTATCATTTTCTCAAGATGTCAAGCTTTCCACAGTAAGGGAAGTGAAAAGTATGTCCCCATTTCTGTCCTCTCCAAAGACAAATGTGGAGGGCCAGGGAATGGCTGCAGCAGAACTGTGTCTCTGGGATGGGGTTTCAGCACACTGAGGATCTGGTTGAGTTAGTCAACAAGTGTTTATTGAGCACCTGCTCTATGCTAGGTAGGTTCTCAGCCCTGGGAGTAGAGCGGTGAACAAAACAAAGTCTCTGCTTTCCAGCCTAGATCATTGTGTGTGTTTAGGGAGGGGGGAGGTACTACCCACATAAACACCCACATAAAGAAGCTGTTTTCAGAAAGCGGTAAGTGCTATGTGGAAAATGGGGCAATACAATAAGAGAGCATGTGGCAGCACTGCCCCACAGAAACATAATGTGAGGCTGATAATTTTACATTTTCCAGAGGCTACATTGAAAAGGGTAAAAAGCAACACATTTATCATTAAAGTTAATTTTGTTTTGTTTTGCTTTGTTTTTGAGACAGGGTCTCACTCTGCTACCCAGGCTGGACTGCAGTGGCATGATCTTGGCCCACCTCAACCTCTGCCTCCCAGGCTCAAGCAATCCTCCCATCTCAGCCTCCCAAGTAGCTAGGACTACAGGCACACACCACCACACTCAGCTAATTTTTTAATGTTTTATAGAGACAGGGTCTCACTACATTGCTCAGGTTGCTCTCAAACTCTTAGGCTCAGGTGATCCTCCTGCATCAGCCTCAAAGCATTGGGCTGGCCCATTAAAGTTAATTTTAATAACATTTAACTGACTATATCAAAATATTAACATTTCAACATGTAGCCAATATAAACAGTTATCAATGAAATAGTTATTTTTTCATACTGATAGTTTACATTTTTTCATACTGAGTCTTTGAAATCTGATACAAATTTTATACACACGGTCCATCTAGACCCTTAATTTTCAGTGGAGATACCTGATCTGTACTTAATTTCCTAAAACCTTTGGAAAAGCAGAGTCACATACCCAAGTTGTTCCAGACATACTTTAAAGTTTTACGGTAACCAAATTGAGTATCAGTTTTTCATTTTAAATTTACAGTAAATTTTAATAATTTTAGCAATAATTTTAAATTTTATTTTATTATTGTTTTAATAGTGAATAGATTGGAGTGAAAATGAGTTCCGGGCTGGGCACAGTTGCTCATGTTTGTAATCCCAGCACTTTGGAAGGCCTAGGCGGGCTGATTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATGGCAAAACTCTGTCTCTGAAAAATACAAAAATTAGCTGAGTGTGGTGGCAGGTGCCTGTGGTCCCAGCTACTTGGAAGGCTGAGGTGGGAGGATCGCTTGAGCCGGGGAGGTTGAGGTTGCAGTGAGCCAAGATCACACCACTGCATTCCCGCCTGGGCAACAGAGCAAGACCCTGTCTCAAAAGAAAAAAAAAGGGAAGAAAATGAGTTCCTCAGTTCCACTAGTTTTATTTCCCGTGCTCAGTTTTCATATGTGGCTAGTGGCATTCACATTGGACAGCATAGGTATAGACTGATACAGGGCAGAGATTCTTTGAGATGGGTGGATAGAGGGGCCCTCTTGAGGAGGCGATCTGACCACATCTTCCTTCCTCCACTCCACCCACCCTAGTCATGCCACCAACATCTTCCCCGGATTTCTGCAAAGCTACCTAGTGAGTCCTGTCCTCACTCCTGCTCCCTCTTCTGACACACAGTTAACCCACCATATAGACATGCCACAAATTTTTGTTAAATGTTGTCTGATGGTGTCACTCCCCTTCTCAGCTCCCCCTCCTCCCCCAGTGATGTCACACTTGAGATCAAATCCCAGCTGCTCAGCACCCCTTTCATGATCCGGCCCTGCCTGCCTTAGCCCACCCTCCCCGCTGCACTCACTCTGCCTCAGTACACAGACCTTGCTCTCCTCACACCTAGCCTGCGCCCACCCATGACGCTGACACCTGCTGTGCCTCTACCTGGAATGCTCTTCCCCTAGCACCCACATGGCTCATGCTCTCATATTTAGACCTCAGCTCAATGTGACCTCCTCAGAGACACCTTCCCTGACCATTCCACGACTCTAACCCCTGCCCTGGCCTGTTTATTCTTCATAGCAATGACCATGTCCATCATTGTGCTTTATATGGACTTTCTTTCCCTACTGGAATGTAAGGTGCTTGGGAGCCGGCACTCTTCCACTTTAACTCACTGCTCTCCCCCCAGTACCTGGGACAGCTGGACACCCAGTAGGTGCTCAGTAAATACTTGTCAGATGGATGGCCAGAGGTCTGTGCAGTCCTTATTTGCCTCATGACCAAGAACCTGCTATGATCTTAGGCACAAAAAGGGTTGGCCGTGCCCTTCCCTGACCGTGAGCAGGTGAGGGGGGACAGGAATGCGCCAGGTGTTCTGACATCTGTGTGTGTGTGTGCACGTGCATATGTGTGCATGTGTGTCTGTGTGTGTGTGTGTCTCCAGGTTAGGTAGGGGCCTGTGGACTCTGGCACTGCCTCATGACCTGTCTTCTCCCCACAG
Seq C2 exon
CCCTGCCTTACCAGCTCTCTGCCCATCTCTCAGTGTGGACCCTAAAGGGGGAGGAAAGGATGCCTTCTGCACGGGGGAAATCCAAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198046-ZNF667:NR_030740:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.321
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)