Special

MmuINT0179686 @ mm9

Intron Retention

Gene
ENSMUSG00000054893 | Zfp667
Description
zinc finger protein 667 [Source:MGI Symbol;Acc:MGI:2442757]
Coordinates
chr7:6238182-6241039:+
Coord C1 exon
chr7:6238182-6238256
Coord A exon
chr7:6238257-6240959
Coord C2 exon
chr7:6240960-6241039
Length
2703 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTCATCTCTTTTCTGCTAGCAC
3' ss Score
6.23
Exon sequences
Seq C1 exon
AGTGCGCAGGCGCGGGAGCTCTGTTGCTAGCAGTTCTGTGGCAGCTGTGAGACGGAGGACGCAGCAGGGAGACAG
Seq A exon
GTGAGGGGGTCTGGTGACTGCGAGCCTTCCTTCAGTGGGAATGATTGATAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGAGAGACAGAGAGAGACAGAGACCTGTTTGCGTGGGTCGCTCTGGTGATCTGAGTTGATTCGGGTGCACGCCTGAAGCTTCGTGTATGCTTGGCGTATATTGTTTGTTGTGGGGTGAACACAGTATGAGAATCCTTCAGGAGACTCCACGTGTGTATATGTGTGTGCGCGAGAGAAGAGAAGTGGAAGGGGGGCGCGGGAGAAGGGAAGTGGGAGGGGGGAAGGGAGAGGGAGAGACCGACTAGGCCTGTGAGCCCCAAGAAACAGGTGCGAATACCACCAACTGCGTGATGTGACCAGTGTGCCCTGTGTAAAGGAAGACACTACAAGGGGCCGCTAGTGGATGTAGGAACAGAGTTCTGAGCATCTCGGTTGTACTTGTGTGTGAGTGTGATAGACTGATGGAGCTGTTTATCATAGTCTGAGGGCACTCGGCCTGTGGGGCCCAGGGACAGGTGACTGTACAGGTCCTAGTGGGAAAGGAGGCCACCGCAGGCTAGAGGGGCCCAAGGGTGTGGGCACACAGTTCTGAGTATCTCTATGTCACTAGCTGTGCTGGTGTGAGAGTGTTGGCGGGTGTGTTTGTGTGTGTGTGAGAGAGAGAGGCTGATGAAGTTATTTATCAAAGTCTAGAGATACAGTGAGCCATCAGATGACAATGGCTTTGTGAGTGTGTGCCAGTGTGTGATTGATCGTGCCTCATCTCATTTGTTACCGTGGCAACGGGCTCCTCTAGAGGAGGAGATGTGATGGCCTAGTCTGGGAAACTGAACCTGTTAAGGATGAGACTTTTCCTTCTGTACAAAGGGATAAATGGCGCTCATCAGAGTGTTGATGGAAAGGCTAAACGGACTGTGAAATAATACAGGTGAAATGCCTTGTACAATGCCTGGGACATACTGAGTGCGGTGTAGAGTCTGGCCTTTGTTGTAGTGCTGACGGTGGAGGTTTGCTGTTGTGTTGTTGGCCTGTGTACAGGTAGGGTTGTAGTGGTGAATTCCAAAGGAGTTTTAGTGTCTACATTTGGAATTTGGCCGTCTTTCACCTCTAGCAGAGGTTCTGGATTGAGCAGTGGTGCACACACCCTCCAGACTCCTTTTATCCCTAGGCAAGCAACCTGGCTTCTTGGTGTCTGCCCAAGAATGGTCCTGCGGGAAAGTTGCATCCTACCCTGACCTGTGGAACCTGTTGGGTGTCTTCCTTATCAAGGTAGCTTGAAGGCTTCAGTAGAGGAGTGGTGGGGAGTGGGAAGGGCCTCAGGCCAGACACCTTTAATGCTAGCACACAGTAGCCCATGGGAGACAGAGGAAGGTGAGTCTCTGTGAAGTCAAGTCTAGCCTGGTTTACAAATAGATTTCCACGACAGGGCTACACAGGCACTGCTCTTAAATTCAGAATGGAGACTCCTGTGGACACATGGGTAAAGAGGTTTCCTTAGTCCCTACTGGCTGCACTTTGTCCACATTTTTTTGGAGATAGCTGCCTAATGACTGACTCTAGTACACCATTTGCTTTCTCCACAGTCACCAAAGCCATTTTTATGCCGTGTAGCCACCTCCAAATTTTGTTAAGTAGAAAGTCTGATTAGTCTCTCTCCTGCTCAGTTCCTCTCACCTTTCCCCCAGTTATATCTTATCACAGAAACTGCTCACTGTCACCTTCCTGATCTGGTTCCACAAGCCTTCCTCACCTCACTCTGTCTTAGCACACAGCCATTTTTTTTCTTTTGCCAGAGGGTGGGGGTGGGAGGGGGAGATGGGGGGTAGTGGGGTAGGATGTCCAAGTGTGAGGGAGGTTTCTCTGTATAGTCCTAGCTGGGATTAAGGGCACGTTCCACCCCCATCCCAACCCCTCCCACTTCTGGCTACACACAGCCTTCTTATATCTCTCTACACATCAAGTCCGGGCTTCATTAGCACAGGGCCTTGGCTGTACCTGGAAAAGTGTCTTCCCTGTACCCTGTGGCTCACATTCAGATGTCAGCTTATGGCTACCTTCTTAGAGAGGTAACCGTAACTCCTGCACCCCTCTCTGGTCCGCTATACGGCCCTTGTTTTACCTCTTAGGGTATGCATGTGCCCCCCATGCCCAGTTTATGTTATGTTGGATGTGGAAACCTGGGGCTTAGTGCATGCCAGGCCATCTCACTCTGTCAACTGAGCTACATGCCCGGCTCAGCACGTGCTTCTTGTCACTCAGCTTCTCTGGGTTTGTAGCTCTGGGAGGAGTGAAGGAAATAGTAAGGATTCCTGCTCTTGACCCCAAATCACTACGTGCCCTGTGGATTGGTTCAGGTGCCTTGTCCCCACCGGAACAAACAGTGCCTGGGAACAGCAACTTTCCTGCTTTGACTCTCATTACGGTACCTGTCACCTGCAGTCACCTGCCATAAGATGGGTGGCCAGGTAGGTGTCTGTACTCTCTTCCTTAGTGTCCTGGCCAGGAGCTCATAGGAACAGACAATGTTGTGTGATTCTCTTCTTGCCCCTTCCTGACTCTAATGATGGGGGGGGGGGGCTTATTTCAGGCACCTTGGCCTGGCACAGGTGACTGGGGACATCAGGGCCACTGAGCTTCCTCATCTCTTTTCTGCTAG
Seq C2 exon
CACTCTGCCTCAGTCTGAATGTGGACCATCAGCAGCGGGAGGAAAGGATGCCTGCAGTCCGCGGGAAATCAAAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054893-Zfp667:NM_001024928:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.455
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000128658





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000083507, ENSMUSP00000104202
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:56462430-56477271 
ALTERNATIVE
HsaINT0188044
(ZNF667)
Human
(hg19)
chr19:56973785-56974178 
HsaINT0188050
(ZNF667)
Rat
(rn6)
chr1:71287600-71290267 
ALTERNATIVE
RnoINT0168564
(Zfp667)
Cow
(bosTau6)
chr18:63883544-63883901 
BtaINT0165938
(ZNF667)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"