RnoINT0168564 @ rn6
Intron Retention
Gene
ENSRNOG00000033906 | Zfp667
Description
zinc finger protein 667 [Source:RGD Symbol;Acc:1359114]
Coordinates
chr1:71287518-71290337:-
Coord C1 exon
chr1:71290268-71290337
Coord A exon
chr1:71287600-71290267
Coord C2 exon
chr1:71287518-71287599
Length
2668 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
TGATCTCTCTTTTCTGCTAGCTC
3' ss Score
7.87
Exon sequences
Seq C1 exon
GCAGGCGCGGGGGCTCTGTTGCTGGCAGTTCTGTGGCAGCTGTGAGACGGAGGACGCTGTAGGGAGATAG
Seq A exon
GTGAGAGGTCTGGTGACCGCGAGCCTTCGGTGGAAATACTGAATGGCGTGTGTGTCTGTGTGCGTGTTTGTGCGTGTGTTTGTGTGTGAGAGAGAGAGAGAGAAAGAGAGACCTGTTTGCTTGGGTCGTTCTGGTGATCTGAGTTGATTTGTGTGCACGCCTGAAGCTTCGTGTACGCTCAGCGTGTCTTGTCCGGTGGACACAGTATGAGAATCCTTCAGGCGACTCCACGTGTGTGTATGTGGCAGAGAGAAATGGAGGGAGAGACAGACACACACACACGGAGACTGACTAGGCCTGTCAAGAAACAGGTGCGAATACTACCAACTGCGTGATATGACCTGTATAAAGGAAGGCACCACAGGAAGGGGCCGCTAGTGGTTGTAGGAACAGAGTTCTGAGCATCTCGGTTGTACTTGTGTGTGAGTGTGACAGAATGATGGAGGTGGAGGGGGGCACTCGGCCCGTGGGGCCCAGGAACAGGTGACTGTACAGGAACTGATTAGTGGCGTAGTGGGAAAAGGAAGCCACCGCATGCTGGAGGGGGCCGAGGGTGTGGGCAAACAATTCTGAGCATCTCTTTTGTTCCTAGCTGTGCGGGTGTGAGAGTGTTTGCGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTGAAGTCTAGAGATACTGTGAGCCACCAGATGACAGTGGCTTTGTGAGTGTGTGCCAGTGTGTGATTGATTGTGCCTCATCTCATTTGTTACCATGGCAACGGGCTCCTCTAGCAGAGGAGATGTGATGGCCTACTCTGGGAAACTGAACCTGTTAAGGATGAGACTTTTCCTTTTGTACAAAGGGATAAATGGTGCCCATCAGAGTGTTGATGGAAAGGCTAAATGGAATATGAAATTACACAGATGAAATGCCTTGTATAATGCCTGAGACATACTGAGTGCAGTGTAGAGTCTGGCCTTTGTTGTAGTGCTGAGAGTGGAGGTTTTGTGTTGTGCTGTTGTCCTGTGTACAGGTAGGATTGTAGTGGTGAATTCTGCATTTGGAATTTGGCTGTCTTTCACCTCTACCAGAGGTTCTGGTTTGAGCAGTGGTGCACCCCCCCCCCCACATACTCCTTTTACCCTTAGGCAAGCATCTGGCTTCTTGGTGTCTGCCCAAGTATGGTCCTGAGGGAAAGGTGCACCCTGTGGAACCTGTTGGGTGTCTTCCTTATCAGGATAGCTTGAGAGCTTCAATGGAGGGGCATTGGGGATTGGGCACAAAGGGCCCTTTAATGCTAACACACAATAGCACTTGGGAGACAGAGGAAGGTGGACTGATTGGTGGATCTCTGTGAATTCAAGTCTAGCCTGGTCTACAAATAGATTTCCAAGACAGGGCTACACAGTCAGACTGTCTCAAAAAAAAAAAAAATGTCAGGTACTACTTCTTAAATTCGGGATGGAGACTCTTGTAGCAAATGGGTAAAGAGGTTTCCTTAGTCTATACTGGCCACATTTTGCCCACAGTTTTGATATAGCTGCCTAATGACTGACACTGCTTGCTTTCTCCACAGTCACCAAAGCCGTTTTTATGCCAAGTAGCCACCTCCAAGTTTTGTTAAGTAGAAAAGTCTGATTAGTCTCTCTCCTGCTCAGTTCCTCTCACCTTTCCCCCAGTAATCTTATCACAGAAACTGCTCACCGCCTCCTTCCTGACCTGATTCCACCAACCTTCCTCACCTTACTGTCTTAGCACATAGCCTTTTTTTTTTGCCAGAGGGTGGGGGTGGGAGGGGAGATAGGGGTGGGTTGGGGTAGTAGGTAGGACATCCAGGTGGGAGGGAGGTTTCTCTGTATAGCCCTGGCTGGGATTAAGGACCTGTGCCACCCCCACCTCAAGCCCTCCCACCCCTGGCCGCACATAGCCTTGTTAGATCTCTCTACACCTCAAGCCCATGCTTAGCACAGGGCCTTGGCTGTACTTAGACAGTTGTCTTCCCTGTACCTTGTGGCTCACGTGCTTACTACATTCAGACTTCAGCTCACTGCTACCCTCCTGAGAGAGGCCTTTCTCAGCTCCTGCATCTCTTTCTCTGGTCCCCTGTGCCTTGTTTTACCCCTTAGGGTAGGCATGTGCCACCATGCCTAGTTTATGTTATGTTGGATGTGGAACCCGGGGCTGAGTGCATGCTAGGCCACCTCACTCTACCAGCTGAGCTCCATGCCCAGCTCCAGCGCCTGCTTCTTGTTATGCAGCTTCTCTGGGTATGGTAGCTCTGGGAGTGTCGAACGAAATAGTAAGGATTCCTGCTTTTGACCCTAAATCACTATGCCCTGAATGAATGGTACATGGGATCAGGAACTTTGACTCTCAGTACGGCGCCCAGCACCTGCAGTCACCCGCCGTCAGGTGGCTGCCAGGTGTCTGTACTTTCTTTATCGGTGTCTGGCCATGAGCCTACTGTGATCGTCCGAACAGACAGTGTTGTGTGATATTCTCTCCTTGCCCCTTCCTGACTTTAGTGGGGGTGGGGGTGGGACTTATTTCGGGTGACTTGGCCTGGGACAGGTGATTGGCGACCGGAGACTTCAGGACCACGCTCGAAGGCCATTGAGCTTCATGATCTCTCTTTTCTGCTAG
Seq C2 exon
CTCTCGGTCTCAGTCTCTGAATGTGGACCGTCAAAGCTGGGAGGAAAGAATGCCTGCAGCCCGAGGGAAATCAAAATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033906:ENSRNOT00000063956:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.909
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]