BtaINT0165943 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006650 | ZNF668
Description
Bos taurus zinc finger protein 668 (ZNF668), mRNA. [Source:RefSeq mRNA;Acc:NM_001076953]
Coordinates
chr25:27431639-27434430:-
Coord C1 exon
chr25:27433762-27434430
Coord A exon
chr25:27433321-27433761
Coord C2 exon
chr25:27431639-27433320
Length
441 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
GGGTCTCTGCATTCCCACAGGTC
3' ss Score
9.51
Exon sequences
Seq C1 exon
AGAAGATCCGCCCATCGAGGCCATGGAGGTAGAGTCTCCGGAGGAGCGGTCCCCAGCCCCGGGCTACAAGCGCTCTGGCCGCCGCTATAAGTGCCTGTCCTGTACCAAGACTTTTCCAAATGCACCCCGGGCAGCACGCCATGCTGCCACGCACGGGCTTGCAGACTGCACTGAGGAGATGGCCGAAGCGAAGCTGAAGCCAGAGACAGACCCCAAAGCGGAAGATGCCAGCGGGGACAAGGTGTCAGGTGCAGCGGCCAAGCCTCGGCCCTATGCTTGCCCGCTGTGCCCCAAGGCCTACAAAACAGCACCAGAGCTGCGCAGCCACGGGCGCAGCCACACGGGCGAGAAGCCCTTCCCTTGCCCCGAATGCGGCCGCCGCTTCATGCAACCGGTGTGCCTGCGCGTGCACCTGGCCTCGCACGCTGGCGAGCTGCCCTTCCGCTGTGCGCACTGCCCCAAGGCCTACGGCGCGCTCTCCAAGCTAAAGATCCACCAGCGTGGTCACACGGGCGAGAGGCCCTACACCTGCGCCGACTGTGGCAAGAGCTTCGCTGACCCCTCGGTGTTCCGCAAACACCGGCGCACGCACGCAGGCCTGCGACCCTACAGCTGCGAGCGCTGTGGCAAGGCCTATGCAGAACTCAAGGACCTTCGCAACCATGAACG
Seq A exon
GTGAGGGAGGTGGACTGGGTGGGGGCGGCTGAAGGGTTGGGAAGAGTGCACCAATAGGGTAAAGACGTTGAGTCCCAGAGAGCGGAAGGAACCAATGGGAAGGCGAGTGAGGCGGATCTATGGGAGCTGGAGGGTGAATCTGGGATCTGATTAGCCTGGGTTCCTAGCGTGCAGGGAAGGGGGCGGGGCTTGAAGTTGGGCTGCTCCTAGGATCTTTGGTCCAGTGCAAGAGGTGGTGCGAATGGGGTCCAGGTCTGTTGCATGCAGTGACGAATCTGGAACCTATACCTGTCCTGAAGGCTTTTTACTCTGGGCTACAGCGCTGTGGCCCATAGACCAAGGCCCCGGAGAGGTTAGGGGGCCCTAACTTACAGTGCAAACAGGCAGCGGGGGTCAGGCGATGGGCTGCCACCTTCACACTGGGTCTCTGCATTCCCACAG
Seq C2 exon
GTCCCACACCGGCGAGCGCCCCTTCCTCTGTTCAGAGTGCGGGAAGAGCTTCTCCCGCTCTTCCTCGCTGACTTGCCACCAGCGCATCCATGCGGCGCAGAAGCCCTACCGCTGTCCAGCCTGTGGCAAGGGGTTTACGCAGCTCAGTTCCTACCAGAGCCACGAGCGCACGCACTCAGGCGAGAAGCCCTTCCTGTGCCCGCGCTGTGGCCGCATGTTCTCCGACCCCTCAAGCTTCCGGCGCCACCAGCGGGCACACGAGGGCGTGAAGCCCTACCGCTGCGAGAAGTGCGGCAAGGACTTTCGGCAGCCGGCTGACCTGGCCATGCATCGGCGGGTGCACACGGGCGACCGACCGTTCAAGTGCCTGCAGTGTGACAAGACATTCGTGGCATCCTGGGACCTCAAGCGGCACGCGCTGGTGCACTCGGGCCAGCGGCCATTCCGCTGCGAGGAGTGCGGGCGAGCCTTCGCCGAGCGAGCCAGCCTTACTAAGCACAGCCGGGTGCACTCGGGTGAGCGCCCCTTCCACTGCAATGCCTGCGGAAAGTCCTTCGTGGTCTCATCCAGCCTGAGGAAGCACGAGCGGACCCATCGAAGCAGCGAGGCCACAGGGGCTCCCCCACAACAGGAGCTGGTGGTGGGGCTGGCACTACCGGTCAGCATGGCTGGCGAGGGCCCAGCCGCCCCAGCATCAGGGGCGGCGCTCGGAGACCCTCCAGCTGGGCTGCTGGGGCTGCCCTCGGAATCGGGTGGTGTGATGGCTACCCAGTGGCAAGTGGTGGGCATGACGGTGGAGCACGTGGAGTGCCAAGATGCAGGGGTTGGTGAGGCTCCTGGTCCCTTGGGGGCGGCAGGTGAGGTGGGGGGTGAGGAGGTGGATGAGAAACCACCCCAGTTTGTGTGCCGGGAGTGCAAGGAGACGTTCTCTACGCTGACATTGCTGCGACGGCATGAGCGCTCACACCCAGAGCTCCGGCCCTTCCACTGTACCCAGTGCGGCAAGAGCTTCTCAGACCGGGCTGGGCTGCGCAAGCACAGCCGCACCCACAGCTCTGTGCGCCCCTACACCTGCCCCCACTGCCCCAAGGCCTTCTTGAGTGCCAGCGACCTGCGCAAGCATGAACGCACCCACCCTGTGCCCATTGGAACCCCCACGCCCCTCGAGCCCCTCGTGGCTTTACTAGGAATGCCTGAAGAGGGACCAGCCTGAGGTCCAGGTCCCTCTGCCACACTCCTGGGAACCCTGCCCCTATGAGGTGCTTCCCAAACCCCCCTTTGCCGCAGATCACTCTTAGACTTCAGATCCATCTCTGTGCCCAGGCAGCTAGCTCATCCTGACAAAGCTGGGGACAGTGGTGGCTGGTAGCAGTTGGCAGGAGACCTGGCTCGCTCCAAGCACCACTCATTAAAGCATTCAGTTGACACTGGGTTGTCTTCTGTGTTCTGGTTGGGGGTAAGTAACAGAGGAGTTTGGGCACCTGATAAGGTTTAGTGGAGATCCCTGGACTGACAAGTTAGAAACTAGAAGGGTCTTTGGGTGCATTGTTTTCTCTAAATATGTTTTCAGAATATCTTGTGATGAAGGGTTCCAGGATCAAGTGAGTACCGGGAATTCCTGTACCTTCTTGGGAATTCTTGGTGATCAAAGTATATTAAAGTCATTGATAAGTCCTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006650:ENSBTAT00000008736:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.359
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=PU(23.1=2.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(73.1=4.7),PF134651=zf-H2C2_2=WD(100=6.4),PF097235=Zn-ribbon_8=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGCCTATGCAGAACTCA
R:
AAAGTCCTTGCCGCACTTCTC
Band lengths:
347-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]