MmuINT0179691 @ mm10
Intron Retention
Gene
ENSMUSG00000049728 | Zfp668
Description
zinc finger protein 668 [Source:MGI Symbol;Acc:MGI:2442943]
Coordinates
chr7:127863047-127868424:-
Coord C1 exon
chr7:127867756-127868424
Coord A exon
chr7:127867364-127867755
Coord C2 exon
chr7:127863047-127867363
Length
392 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
GGTCCTCCATTATTCCACAGGTC
3' ss Score
9.79
Exon sequences
Seq C1 exon
AGAAGGCCTACTCACCAAGGCCATGGAAGTGGAGGCTACAGAGGCCAGGTCCCCAGGCCCCTGCTACAAGCGCTCTGGCCGCCGTTATAAGTGCCTGTTTTGTACAAAGACATTTCCAAATGCACCCAGGGCAGCCCGCCATGCTGCTACACATACACCCACAGACTGCACAGAGGAGGTGAGGGAGGCCCAGCCAAAAGTGGATACAGAGCCCAAGGCGGAGGAAGCCAGCGGAGACAAGGTATCAGCTTCAGTAGCCAAGCCCCGGCCCTATGCCTGCCCACTGTGCCCCAAGGCCTACAAGACAGCTCCTGAGCTACGCAGCCATGGGCGCAGCCACACTGGTGAGAAACCCTTCCCGTGCCCAGAGTGTGGCCGCCGCTTCATGCAGCCAGTGTGCCTGCGTGTGCACCTGGCCTCACATGCCGGTGAGCTGCCCTTCCGATGCACACACTGCCCCAAGGCTTATGGTACACTCTCTAAACTAAAGATCCACCAGCGTGGGCACACAGGTGAGCGGCCCTATGCCTGTCCTGACTGCGGCAAGAGCTTTGCTGATCCTTCAGTGTTCCGCAAGCATCGGCGCACCCATGCCGGCCTTCGACCCTACAGCTGCGAGCGCTGCGGCAAGGCCTATGCTGAGCTCAAGGACTTACGCAACCATGAAAG
Seq A exon
GTGTGATCCCTAGAGACATCTGGGAGACAGAAGTGGGAATTAGTATCTCGATAGACTATGCCAGTGGGAAGAGCTGCGGCTGGACACTTGTCTAAAGATGGGAGCGCCTGGTTGAACAGGGATCAGGCTGGGTGGCAGAGCTAAGTGACTAGAGATGGAACCCTGAGAGCAGGCAAGGCTTTGTTGGCCTCTGTTCCAGGCAGTATTTGGAGTCGGTCATCAGCAGGGTCTTGGGGGAGGGCCCATGTGGGTAGGTCATAGGAGAGAAGTTCTATGGATTTCTTACTCATGGTACAGCTCTGTGGCTCTTAGGGAATTAGCTCCCAGACAGGTGATTGTAGGGCTCTCCCAGTGAGTGTTGCAGTCTAACCAGGTCCTCCATTATTCCACAG
Seq C2 exon
GTCCCACACGGGTGAGCGCCCCTTCCTCTGCTCGGAGTGTGGTAAAAGCTTCTCTCGATCCTCTTCCCTCACATGCCACCAGCGTATCCATGCAGCCCAGAAACCCTATCGCTGCCCGGCTTGTGGGAAGGGCTTCACACAGCTCAGCTCTTACCAAAGCCATGAGCGCACACATTCAGGCGAGAAGCCCTTCCTGTGCCCACGGTGTGGCCGCATGTTTTCTGATCCGTCAAGCTTCCGCCGTCACCAGCGCGCACATGAGGGCGTAAAGCCTTACCGCTGCGAGAAATGTGGCAAGGACTTCCGGCAGCCCGCCGACCTGGCCATGCATCGGCGAGTACACACCGGCGACCGACCCTTCAAGTGCCTGCAGTGTGACAAGACTTTTGTGGCTTCCTGGGACCTCAAGCGGCATGCGTTGGTGCACTCAGGACAGCGGCCATTCCGCTGTGAGGAGTGTGGGCGAGCATTTGCTGAGCGAGCTAGCCTCACGAAGCACAGCCGCATGCACTCTGGGGAGCGTCCTTTCCACTGTAATGCCTGTGGGAAATCCTTTGTGGTGTTATCCAGCCTCAGGAAGCATGAGCGTACCCACAGAAGCAACGAGACTACAGGAGCTGCCCCCCAGCAGGAGTTGGTGCTGGGACTGGCACTGCCTGTAGGTGTCGTAGGTGAGGGCTCGGCCGCCCCCGTGGCGGGTGCAGGGGTAGGGGATGCTCCAGCGGGGCTGTTAGGGTTACCCCCTGAGTCTGGTGGTGTAGTGGCCACACAGTGGCAAGTGGTGGGTATGACTGTGGAACATGTGGAGTGCCAGGATGCTGGCGTTGGGGAAGCGCCTAGTACCCTGGGAGATGCAGGAGAGGTGGGGGGTGAGGAGACTGATGAGAAGCCCCCACAGTTTGTGTGTCGCGAGTGCAAAGAAACTTTCTCCACACTGACACTGCTACGCAGGCACGAGCGCTCACACCCGGAGCTCCGGCCCTTTCCCTGCACTCAGTGTGGTAAGAGCTTCTCAGACAGGGCTGGGCTTCGAAAGCATAGCCGCACCCACAGCTCTGTCCGCCCCTACTCCTGTTCCCAATGTCCTAAAGCTTTCCTGAGTGCCAGTGACCTGCGCAAGCATGAACGCACCCACCCCGTGCCCATCGGGACCCCCATACCCCTGGAACCTCTTGTGGCTTTGCTAGGAATGCCAGAAGAAGGGTCAGCTTGACGTCTATAGATCTCCACTACACTCCAGAAGCCCATCCCTAGTCTCCAAAGCCCTGCCTCTGGGCAACTCGCTCAACTCTTGTCCACTATTAGCTGTGGGCAGTGGAGGCAGATAGCACTTCTGAGGGAGACTCATTAAAGCATTGGCTTTGCTACCAAGCTGTCTTCTGTATTGTGGTTCAGTTTACCTTCAGTGGAAATCTGGGACTAGCATGCAGTGGAAGGGCCTTGGTGACAGACAGGCTCTCACAGCTTAGCCTGATCCAGAACTCACTATGTAGCCCAGGCTCACCTTGAACTCAACCAATCCTCCTGTCTCAGCCTCCCGCTACTAGGATGACAAGGACTTAGCACCACACCTGGCCCTAAAAGGTCTTGAAATACATTGATTGCCAAAGTATATGTTGGGCTGCCTTGTGAAAAAATTTTCATGCCAAGTTGGTACCTCTGAGAATAATTGGTGACTAAAAGGTGTATTAAAAGTACTAGTCCTGCAGTGAACAAACCTATGTGGCTTTGTTTAGCCTCTACTCAGGATCATGAAACCTTTCCTGATTACTGTCCTTTCACAATTAGTGAGCTGGGGTTAAACAATTACTTTTTCTCGGGGGCTGGAAAGATGGCTTCACAGTTTAAGGCTAAGGCTCACAATGAAAAAGGTTTGGTTCCCAGCACCTATACTTGTCTTTCCAACTACTTTAAAAAACAAAACGAAACTTGTCTTTCCTGTTTATCACAGTAACAAATTAGGAAGCATATTTGGAGGGAAGCATTTCTCTTCACATTAAAACCCATGAAACAGAATGAACCTTACTAGAAAAGTCTTTACTGGGTTTGATGGTTTGTGCCTTTAATCCCGTATTCCAGAGGCAAAGGCAGTTGGAGTTTGAGGCTAGCCTGATCTACAGAATGAGTAGCTAGCCAGGGCTACGCGTAGAAACTTTGTCTCAAGAAAGAAGAAGAAAAAAAGAAAGAATGGATGAAAAGAAAAGTTAAAACTATATGAAGAAATCATACATATGGCCTCAGCAGTGGGCATATGCTGTGTGCCTCAGTGGACAGACTTGTTCCTAAAAGATGTTGGTAGGCTGCACCACCCAGGAGACAGAGGGTCTCTGAGTTCAAGGCCAGCTGGGCCAACATCAGAAGTTCCTGGTAACCTGGGCCACATGAGACGCCCACAGAAGTTAACAGCTGAGATTTATCCTGGTGGTGGAGCACTTAACCGCCATCTGTGAGGTTCTGGGTTCTGCATACAGAATTAGGAGAGGAAAGTTGACTTTCCGAGTTTAAATTCATGGCTTTTGCATTAAATCACAGTGTAGCCCAGGCTGACCTCAAACTGGTACTTCTGCTGTAGTCTCCCAGGCACATGCCAGCACACCTATCTGTTTCTTACATTTGTTGGGAAAACAACCAGGGTTTTCCTCTCCTGTGTGTTTGCTCCCATCTCTTTGTATTTCATGTCAGCTGGTGGTCGATGTAATGAAACCAAGCTTGGGCTGGGAGCAGATTAGTTTGCCACTTCTCAGATGTCTGAGGTTTGTGTCAGCCCTAGAGCTGGCTACTGCCCGCACTGTGTAACCCGCCTGTAATGTTCATGTTGATCCTCCAGTGTTCTCAAGTTTATTGGTATGGCCAATGTCATCTTCGCAACTAGGAGACAGAAGTTGCCGTGGGCACATGGCTTGTCACCAGCCTGGTGTTTGCCTGTGTATGTATGGCATTATGAATGGCTTTGAAAACAGCCATGAGAACTTTAATGTGCACCATTTTGATTTATAGAAAGCATCCAGTTTTTTAACCCAGTCTGAAAATCCAAAGTTAATACGGAACACCCATCTTTCTCTTTTCATTGGAACACCCATCTTTCTCTTTTCATCGGAACATCCATCTTTCTCTTTTCATTTGGTTTAGTTTTTGGTGTTGGGTGTTGAAGTTAGGGTCTCAAATGTAATAGGTATTTGCTCTGCTAATGAGCTACATCTCTAGACTGGATACTTTTTTTAAAAAACAGGTGTTGTGTTTGACATGCTGAAAACCAAAGCACTAGAATAGAACATACATAATTGGCACAAAATTAAAGTCAACCAGTAGAGTGAGAGAGGGGATCCAGAGACATCCATGCCTACATCTGTGAACTCACTATTACTTATTTTCAAGTTGTGTAGTGGTGAGGATTGGACCAGGAGCCACAGGCATGCTGGGCAAACACTATAGCATGAGCCGCATCTCCAGCCCTTTATTTTATTTTATTTTGTTTTGAAACAGCAACTAGACTGGCCTCAAACTCCCTCTTAAGGCCTCAAACTCCCTCTCAAGGCCGGGAAGACTTGGAACCTTTTGTTTTTTTTTTTTGTTTGTTTGTTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGATTCATTTGCCTGCCTGGATAAAAGGTATATGCCACTACCTGGCAGACTTGGAAGTTTTGGTCCACCAGTGACAGCCTTCTGGGACAGGTGTATAGTACCAAGCCCAACACATTTTATTTATCATTCGTTTTTTATCGAGTTTTTGTTGTAGTGATTTTTTTCTTTTTTCTTTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTCTGTTTTGTTTTGAGTTAGTTTTGCTGTGTAGCCCAAAGTGGCCTTTAAAACCTTACAGTGTTGTCTGTCGTTCAGCATCTGAAGTGCTAGGATTGTTGCCAATTTTTGTGAACATTTTTAATGACAGCTGTAATTGTTCATCTCACTGGGAAAAACTAGACTGATGCATAGTTTTCCTTGAAAAATGTCTAGATGAGGCTGTGACATTTTCATTATCACATGACTTGCCAGAAATCGTGTTAGTCAGATGTGGTACCACATGCCCATAACCCGAAAACTTGAGAGATAGAAGGCAGGAGATTGAGAGTTAGAGGCTAGCCTTGGCTACATGGCAGATTTGAAGGAGTCTAAAGTGAAATGAGAGACTGTCTCAGTAAACAGAACAGTAAAATAAAGGGAAGTGGGGTAAATAAACAGGTGGGGACACCTGTTACACAGAGAAACCCTGTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049728:ENSMUST00000054415:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=NA C2=0.309
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=11.6),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=PU(23.1=2.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(73.1=4.7),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTATGCTGAGCTCAAGGAC
R:
CCGGAAGTCCTTGCCACATTT
Band lengths:
345-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types