RnoINT0168569 @ rn6
Intron Retention
Gene
ENSRNOG00000016683 | Zfp668
Description
zinc finger protein 668 [Source:RGD Symbol;Acc:1308623]
Coordinates
chr1:199310935-199314281:-
Coord C1 exon
chr1:199313613-199314281
Coord A exon
chr1:199313260-199313612
Coord C2 exon
chr1:199310935-199313259
Length
353 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
GGTCCTCCGTTGCTCCACAGGTC
3' ss Score
9.87
Exon sequences
Seq C1 exon
AGAAGGTCTACTCACCGAGGCCATGGAAGTGGAGGCTGCAGAGGCCAAGTCCCCAGGCCCCTGCTACAAGCGCTCTGGCCGCCGTTATAAGTGCCTGTTTTGTACAAAGACATTTCCAAATGCTCCCAGGGCAGCCCGCCATGCTGCTACACATACAACTACAGACTGCACAGAGGAGGTGAATGAGGTCCAGCCGAAGGTGGATGCAGAGCCCAAGGCTGAGGAAGCCAGTGGAGACAAGGTATCTGGGTCAGTAGCCAAGCCCCGGCCCTATGCTTGCCCTCTGTGCCCCAAGGCCTACAAGACAGCTCCTGAGCTACGCAGCCATGGACGCAGCCACACTGGTGAGAAGCCCTTCCCGTGCCCAGAGTGCGGCCGCCGTTTCATGCAGCCAGTGTGCCTGCGTGTGCACCTGGCCTCACACGCTGGTGAGCTGCCTTTCCGATGCACACACTGCCCCAAGGCTTATGGTACACTCTCTAAACTAAAGATCCACCAGCGTGGGCACACAGGCGAGCGGCCCTATGCCTGTACTGACTGCGGCAAGAGCTTTGCTGATCCTTCAGTGTTCCGCAAGCATCGGCGCACGCATGCAGGCCTGCGCCCCTACAGCTGCGAGCGCTGCGGCAAGGCCTATGCTGAGCTGAAGGACTTACGCAACCACGAAAG
Seq A exon
GTACGATCCTTAGATGCAAAAGTGGGAATTAGCGGCCAGACACTAGGGGTGCCTGGTTGAACAGGGGTCAGGCCGGGTGGCGCGGTGAAGTGACTAGAGATGGAACCCTGAGAGCGGGCAAGGCTTTATTGGTCTGTGTTCCAATACAGCTGGAAAGTAGGCAGAATTTGCGGTCAGTCATGCACAGGGTCTTAGGGGAGGGGCGCATGTGTGTCGGTCATAGGAAAGAAGATCTATGAATTTCTTACACTAGGGTACAGCTCTGCAGCTCTTCGGGAATTAGCGCCTAGACAGGCTATAGGGCTGAACAGTGAGTCTGTTGCCATCTAACCAGGTCCTCCGTTGCTCCACAG
Seq C2 exon
GTCCCACACGGGTGAGCGCCCCTTCCTCTGCTCAGAGTGTGGTAAAAGCTTCTCTCGATCCTCTTCCCTCACATGCCATCAGCGTATCCATGCAGCCCAGAAACCCTATCGCTGCCCGGCTTGTGGTAAGGGCTTCACACAGCTCAGCTCTTACCAAAGCCATGAGCGCACACATTCAGGCGAAAAGCCCTTCCTGTGCCCTCGGTGTGGCCGCATGTTCTCTGATCCCTCGAGCTTCCGCCGCCACCAGCGGGCACATGAGGGTGTAAAGCCTTACCGCTGTGAGAAATGTGGCAAGGACTTCCGGCAGCCAGCTGACCTGGCCATGCACCGTCGAGTACACACCGGCGACCGACCCTTCAAGTGCCTGCAGTGTGACAAGACTTTTGTGGCTTCCTGGGACCTCAAGCGGCATGCATTGGTACACTCAGGACAGCGGCCGTTCCGCTGTGAGGAGTGTGGGCGAGCATTTGCTGAGCGAGCTAGCCTTACAAAGCACAGCCGCATGCACTCTGGCGAGCGTCCTTTCCACTGTAATGCCTGCGGGAAATCCTTTGTGGTGTTATCCAGCCTCAGGAAGCATGAGCGCACCCATAGAAGCAACGAGACTACGGGAGCTGCCCCCCAGCAGGAGTTGGTACTGGGACTAGCACTGCCTGTAGGTGTCGTAGGTGAGGGCTCAGCTGCCCCTGTGGCAGGTGCAGGGATAGGGGATGCTCCAGCAGGGCTGCTAGGGTTACCGCCTGAGTCTGGTAGTGTAGTGGCCACACAGTGGCAAGTGGTGGGCATGACTGTAGAGCATGTGGAGTGCCAGGATGCTGGCGTTGGCGAAGCTCCTAGTACCCTGGGAGATGCAGGAGAGGTGGGTGGGGAGGAGACTGATGAGAAGCCCCCACAGTTTGTGTGTCGAGAGTGCAAAGAAACTTTCTCCACACTGACATTGCTACGCAGGCATGAACGCTCACACCCAGAGCTCCGGCCCTTTCCCTGCACCCAGTGTGGTAAGAGCTTCTCAGACAGGGCTGGGCTTCGTAAGCATAGCCGCACCCACAGCTCTGTACGCCCCTACTCCTGTTCCCAATGTCCTAAAGCTTTCCTGAGTGCCAGTGATCTGCGCAAACATGAACGCACCCACCCTGTGCCCATCGGGACCCCCATACCCCTGGAACCCCTTGTGGCTCTGCTAGGAATGCCAGAAGAAGGGTCAGCCTGAAGTTTATAGATCTCCACTACACTCCCAGAAGGCCATCCCTAGTCTCCAAACCCCTGCCTCTGGGCAGCTAGCTCAGTTCTCGTCCACTAAGAGCTGTGGACAGTGGAAGCTGGTAGCATTTGTGAGAGGTACTCATTAAAGCATTGGCTTTGATACCAAGCTGTCTTCTGTATCTTGGTTCAGTTTAACTGGAGTGGAAATCTGGGATTAACATACATTAGAAGGGTCTTGGTGACAGCCTCTCACAACTTAGCCTGATCCAGAACTTGCTATGTATCCCCGGCTCACCGTGAACTCAACCATGTTCCTATCTCAGCCCTCCAAGTGCTAGGATTACAAGGATTTACCACCACACCTGGCCCCTCAGAGGGTCTTGAAATGCACTGATTGCCAAAGTGTGTTTTGGGTTGTCCTGTGAAAGAGATTTCATGGCCATGGATGCGTCTGTACCTCTGAGGAAAATTGGTGACTGAAAGGTGTATTCCAAGTATTAGTCCTGCAGTAAACAGACCCATGTGCCTTTGTCTGGCCTATATTCAGGATCGTGAAACCTTTACTGATTAAGTCCTCTCACAGGGAGTAAGCTGGGGCTAAACAATTCCTTTTTCTTGGGGCTGGAAAGATGGCTTCACTATTTAAGACTAAGGCTCACAATAAAAAAGGTTTGGGGGTTGGGAATTTAGCTCAGTGATAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCTGAAAAAAAGAGAAAAAAAAAAGGTTTGGTTCCTAGCACCCATACTTGTCTCTCTAATTACTTAAAAAAAAAAAAAAAAGCTCCCCCCCCATATGAGGCAGCTAAAAAAAATAAAATCAAACCTGTCTTTAATGTTTATCATAGTAACAAATTAGGAAGCATATTTAGAGGAAACCAGATTTCTCTTCGCATTAAAACCCATGAACTATAAAGAATTAACCTTACTAGAAAACTCCTTACTGGGTTTGATGGTTCATGCCTTTAATCCCAGTACTCAGGAGGCAAAGGCAGTTGGATCTCAGAGTTTGAGGCCATCCTAATCTACAGAATGAGTTCCAGATAGCCAGGGATACACATAGAAACCTTGACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016683:ENSRNOT00000022452:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=NA C2=0.300
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=11.6),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=PU(23.1=2.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(73.1=4.7),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTCAGTGTTCCGCAAGC
R:
CGAGGGATCAGAGAACATGCG
Band lengths:
344-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]