HsaINT1047619 @ hg38
Intron Retention
Gene
ENSG00000167394 | ZNF668
Description
zinc finger protein 668 [Source:HGNC Symbol;Acc:HGNC:25821]
Coordinates
chr16:31060850-31064481:-
Coord C1 exon
chr16:31063813-31064481
Coord A exon
chr16:31062281-31063812
Coord C2 exon
chr16:31060850-31062280
Length
1532 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
AGTCCTCCACACCCCCGCAGGTC
3' ss Score
7.97
Exon sequences
Seq C1 exon
AGAAACCCCGTTCACCAAGGCCATGGAAGTGGAGGCTGCAGAGGCCCGGTCCCCAGCCCCCGGCTACAAGCGCTCGGGCCGCCGCTACAAGTGCCTGTCCTGTACCAAGACATTTCCAAACGCGCCCAGGGCAGCGCGCCACGCTGCCACACATGGGCCGGCAGACTGCTCTGAAGAGGTGGCCGAGGTGAAGCCAAAGCCAGAGACAGAAGCTAAGGCAGAGGAAGCCAGTGGGGAGAAGGTGTCAGGCTCCGCGGCCAAGCCTAGGCCCTATGCGTGTCCGCTATGCCCCAAGGCCTACAAGACGGCACCCGAGCTGCGCAGCCACGGGCGCAGCCACACGGGGGAGAAGCCCTTTCCGTGCCCCGAGTGCGGCCGCCGCTTCATGCAGCCCGTGTGCCTGCGCGTGCACCTGGCCTCGCACGCTGGCGAACTGCCCTTCCGCTGTGCGCACTGCCCGAAGGCCTATGGCGCGCTCTCCAAGCTCAAGATCCACCAGCGTGGCCACACAGGCGAGCGGCCTTACGCCTGCGCCGACTGCGGCAAGAGCTTTGCTGACCCTTCAGTGTTCCGCAAGCACCGGCGTACTCACGCTGGCCTGCGGCCCTACAGCTGTGAGCGTTGCGGCAAAGCCTATGCGGAGCTCAAGGACCTCCGCAACCATGAGCG
Seq A exon
GTGAGGGTGCCTTCCGGGGCAGGGCGCCTTCCGGGGCAGGGCGACAGCGTTGCTGCAGCCAATGGGGCCTGGGTTTGAGTCTCAGGGTAAAGTGAGCCAATGGGAAGGTGGGCATGGCAGATCCAAGGGGAGGGGCTAGGCATGTGGGAGAAATTGGTGCCCCTGATTGGGCAGAGGTGGCAACCACCTTGAGGTTGATCTCTGAGAATGGGATTGGGTCAGATTGGCCTCCGTTGTAGGCCAGCTGGAAAGGGGGCGGGGTTTGGAGTTGGGCAGTTCTGAGGGTCTTTTGTGGAGACCAGGAGGTGTGAGTGGGGCCTGGTTTGTCTAGGTCATTTTTTTTTTTCTTTTTCTCAGCCTCTACATTAATGACATGTTTCTAGGCTGGGCACAATAGCTCACGCCTATAATTCCAGCACTTTGGGAGGCTGAGGCAGGAGGATTGCTTGAGCCCAAGAGTTCAAGACCAGCCTGGGCAACACAGCAAGCCTCGTCTCTATAAAAATAAAAAAATTACCCGAGCGTGGGGATGTACACTTCTAGTCCCGGGTACTTGGGAGGATAAGGTGGGAGGATGGCCTGAGCCTGGGAGGTCGAGGCTGCAGTGAGCTATGGTCAGGCCACTGCATTCCAGCCTGGGGAACAGGAAAAAAAAGGCGGAGGACACGTATCTTGGTTTTCTGTTTTGTTTTGTTTTGTTTTTGTTTGTTTGTTTTTTGAGACGGAGTTTTGATCTTGTTGCCCAGGCTAGAGTGCAATGGCGCGATCTCGGCTCACCGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGCATGCGCCACCATGCCCGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTCCGTTTTGGTCACACTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCATGTCTTGGTCTTTTTTTTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGCCGCCCAGGCTGGAGTGCAGTGGCAAGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACATGCACCCACCACCACGCCTGGCTAATTTTTTATAGTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCGGGATGGTCTCGATCTCCTGACCTCGGCCTCCCAAAGTGCTGGAATTACAGGCGTGAGCCACCGCGCCCGGCCCATATCTTGGTCTTTAATGTGCAGAGACAGGTCTTTGGAATAGAGACACCCAGCCAGCCTGAAGGCTTCTTCCTCTGGGGTGCAGCCATGTGGCTCTTAGGGGATTAAGCCTAGGCCCCCACGAACGTTTGGGGAGCCCCTAAAGTACAGCCCAGACAGGCAGTGGGGTCACGTTATGGGTCTGTCGCCTTCATGCCAAGTCCTCCACACCCCCGCAG
Seq C2 exon
GTCCCACACCGGCGAGCGCCCCTTCCTCTGCTCCGAGTGCGGGAAGAGCTTCTCCCGCTCATCCTCGCTCACGTGCCACCAGCGCATCCACGCGGCACAGAAGCCCTACCGCTGCCCGGCCTGCGGCAAGGGCTTCACGCAGCTCAGTTCCTACCAGAGCCACGAGCGCACGCACTCGGGGGAGAAGCCCTTCCTGTGCCCGCGCTGCGGCCGCATGTTCTCCGACCCCTCGAGCTTCCGTCGCCACCAGCGCGCCCATGAAGGGGTGAAGCCATACCACTGCGAGAAGTGCGGCAAGGACTTCCGGCAGCCGGCGGACCTGGCCATGCACCGGCGTGTGCACACAGGCGACCGGCCGTTCAAGTGCCTGCAATGTGACAAGACGTTCGTGGCGTCCTGGGACCTCAAGCGGCACGCGCTGGTGCACTCTGGCCAGCGGCCCTTCCGCTGTGAGGAGTGCGGGCGAGCCTTCGCCGAGCGTGCCAGCCTCACGAAGCATAGCCGGGTGCACTCGGGGGAGCGCCCCTTCCACTGTAACGCATGTGGGAAATCCTTTGTGGTGTCGTCGAGCCTGAGGAAGCACGAGCGGACCCATCGAAGCAGTGAGGCCGCGGGTGTGCCCCCTGCACAGGAGCTGGTGGTGGGGTTGGCGCTGCCTGTGGGCGTGGCAGGTGAGAGTTCAGCCGCCCCGGCAGCAGGGGCGGGGCTGGGGGACCCTCCAGCAGGGCTGCTAGGGCTGCCCCCGGAGTCAGGTGGTGTGATGGCCACACAGTGGCAGGTGGTGGGCATGACGGTGGAGCATGTGGAATGCCAAGATGCTGGTGTCCGGGAGGCTCCTGGTCCCTTGGAAGGGGCAGGCGAGGCGGGGGGTGAGGAGGCTGACGAGAAGCCCCCCCAGTTTGTGTGCCGAGAGTGCAAGGAGACCTTCTCCACAATGACGCTGCTGCGTCGGCACGAGCGCTCACACCCGGAGCTCCGGCCCTTCCCCTGCACCCAGTGCGGCAAGAGCTTCTCTGACCGGGCTGGGCTGCGCAAACACAGCCGCACTCACAGCTCAGTGCGCCCCTACACCTGCCCCCATTGTCCCAAGGCCTTCTTGAGTGCCAGCGACTTGCGCAAGCATGAACGCACCCACCCTGTGCCCATGGGGACCCCCACACCCCTGGAGCCCCTGGTGGCTTTGCTAGGAATGCCTGAAGAGGGGCCGGCCTGAAGCCCATGACCCCCCAGCACCACACTCCGGGAGCCCAGCCCCCATCGGGGGCTTCCTGTACCTCCTTTTGCCTGGCTCTGCTCTTTAGACTCCAGATCCCTACCCCTCAGCAACTAGCTCCCCTGTCGGCCAGCTAAGAGAGCTGGGACAGTGGAGGCTGGCAGAAGCTGAGACGTGACTGTCTAGGAGTAACACTCATTAAAGCTTTCATTTTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167394:ENST00000300849:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=NA C2=0.378
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=PU(23.1=2.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(73.1=4.7),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCTCAAGATCCACCAGC
R:
CTCGTGGCTCTGGTAGGAACT
Band lengths:
356-1888
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains