BtaINT0166027 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046481 | ZNF740
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MZB2]
Coordinates
chr5:26980772-26981568:-
Coord C1 exon
chr5:26981479-26981568
Coord A exon
chr5:26980896-26981478
Coord C2 exon
chr5:26980772-26980895
Length
583 bp
Sequences
Splice sites
5' ss Seq
AAGGCAGGT
5' ss Score
2.53
3' ss Seq
CGCCTGACTCTTGCCCCCAGGTG
3' ss Score
10.83
Exon sequences
Seq C1 exon
GGCCACCGAAAAGACAGTGATAAATCCCGGAGCCGCAAAGACGATGACAGCTTGGCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAG
Seq A exon
GCAGGTAATGGGGAATTCCTTGGCAGTCCAATGATTAGGACTCCACGCTTTCATTGTTGAGTGCTTAGGTTCATCCCCTGGTCAGGGAACTGAGATCCCACAAGCCACGCAGAGTGGCCAAAAAAAGAAGAAAAAGGCAGGTAATGGGGAAACGCCCAAACTGATTCAGTTTGGGAATAAGGCAGCCCTCTTCTTTCTTCCCTCTCTGGCTCAGCCCTGAGCTCTCCTCACAGCTGGTGAGTGAGTCACCCTGGCTCCATCCAGAGACCACTTTGGCAGTTGATCTCTGCCCTCTGTGAAACATCCTTGGTAAGGGGAGGGTCGGGGGAGCATGAGGTCCTGTGGCAGAGGGGCAGGCAGTCTCCCTCTAAGGTCAGTTCAGAGTGTGAGGTTTGACCAAGCAGACAGCTTGCTCACCCTGCCTCCTTCCTCCAAGGGTCTCTCAACTCTGAGGGATGTGGGAGATGACAGCATCAGAGAAGTTACTTTGTCCAGCAGTTGAAAATAGGGCCAGGGCAGAATGGAGGCAAGAAGGGGCAGAGGGATAGGGTAGCCTCATGATGCGCCTGACTCTTGCCCCCAG
Seq C2 exon
GTGGTGGTAGTGGAACAAAATGGTTCTTTTCAAGTAAAGATTCCCAAAAATTTTGTTTGTGAACACTGCTTTGGAGCCTTTAGGAGCAGTTATCACCTCAAGAGGCACATCCTTATTCATACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046481:ENSBTAT00000065154:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154431=DUF4630=FE(27.6=100)
A:
NA
C2:
PF154431=DUF4630=PD(20.0=50.0),PF127602=Zn_Tnp_IS1595=PU(71.1=76.2),PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACCGAAAAGACAGTGAT
R:
AGGATGTGCCTCTTGAGGTGA
Band lengths:
203-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]