HsaINT0188272 @ hg38
Intron Retention
Gene
ENSG00000139651 | ZNF740
Description
zinc finger protein 740 [Source:HGNC Symbol;Acc:HGNC:27465]
Coordinates
chr12:53185387-53186031:+
Coord C1 exon
chr12:53185387-53185476
Coord A exon
chr12:53185477-53185953
Coord C2 exon
chr12:53185954-53186031
Length
477 bp
Sequences
Splice sites
5' ss Seq
AAGGCAGGT
5' ss Score
2.53
3' ss Seq
TGCCTGATTATTGCCCCCAGGTG
3' ss Score
8.85
Exon sequences
Seq C1 exon
GGTCACCGAAAAGACAGTGATAAGTCCCGGAGCCGCAAAGATGATGACAGCTTGTCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAG
Seq A exon
GCAGGTAATGGGGTGATCCCCCAAACTCATACAGTTTGGTAATGGGGTAATATTCCTCCTTCTTCCCTCTACCATGTAACCTGGAGCTTTCCCTAGATGCTTTGATCTCTGATAGCCAGTGAGTGAGTCCCCCAGATTTCATCCAGAGACTACCTTGGTAGTTGATCTCCTGCCTTGCTGGAACAGTAATGGTACAGGTTGGGGAGCATGAGATCCCAGATCCCGAGGCATGGGAGCAGGCAGGCTCCAGCTCAAGTCATACTCAGACTGCTGGGTTTGACAGGATAGACAGCTTACCCACTCCACCTCCTTCCCCAAAGGGTCTCTTACCTCCATGGAGTACAGGAGATGGCAGCACCTTTAGACAGCATCAGAGAGGTTCCTTTCTCCAACAGCTGGAAGTGGACCCAGAGTAGAACAGTGTCTCCAGGAAGAGGGCAGTGGTGGCCTCATGACATGCCTGATTATTGCCCCCAG
Seq C2 exon
GTGGTGGTAGTGGAACAAAATGGTTCTTTTCAAGTAAAGATTCCCAAAAATTTTGTTTGTGAACACTGCTTTGGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139651:ENST00000552593:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains