MmuINT1035730 @ mm10
Intron Retention
Gene
ENSMUSG00000046897 | Zfp740
Description
zinc finger protein 740 [Source:MGI Symbol;Acc:MGI:1915994]
Coordinates
chr15:102208236-102208876:+
Coord C1 exon
chr15:102208236-102208361
Coord A exon
chr15:102208362-102208752
Coord C2 exon
chr15:102208753-102208876
Length
391 bp
Sequences
Splice sites
5' ss Seq
AAGGCAGGT
5' ss Score
2.53
3' ss Seq
TGCCTGATTGTTGCCCCCAGGTG
3' ss Score
10.56
Exon sequences
Seq C1 exon
ATGGACTGTAAGCCTAGATTTGATTTGTCTTCAAAGGGCCACCGAAAAGACAGTGATAAATCCCGCAACCGCAAAGAGGATGACAGCTTGGCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAG
Seq A exon
GCAGGTAATGGGGAAGCCCCAGACTCGTGCAGTTTGGTAATGGGGATCTTCCCTGGTGAATCTGAGGCCACTCTGACAGTTGCCGTCCACTCTTGCTGAACATTCTTGGTGCAGGTGGGAAGCGTGGCTTATGTTCTTGGAGCGGGGCAGGTGAACCCCAGCTCACTCACGCTGTTTTGTTGGCTGTGGCAAGACAGCTGGTTCATCGACCCCATCTTCCTCCCTTCACGGCTCTTAGCTCAAGGGGTGTGACAGGTGACAGCACCGCCTTCCACAGTATCAGAAAGGTTCTCAGGTTCTCGGTCCGGCAGCTGTAATTGGTCCCAGAGTAGAATCGTCTCTGGGAAGAGGACAGAGACACCCACATGACATGCCTGATTGTTGCCCCCAG
Seq C2 exon
GTGGTGGTAGTGGAACAAAATGGCTCTTTTCAAGTAAAGATTCCCAAAAATTTTATTTGTGAACACTGCTTTGGAGCCTTTCGGAGCAGTTACCACCTCAAGAGGCACGTCCTAATCCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046897:ENSMUST00000119800:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.782 A=NA C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTGTAAGCCTAGATTTGAT
R:
CAGTGTGGATTAGGACGTGCC
Band lengths:
249-640
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types