BtaINT0166037 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040381 | ZNF75A
Description
Bos taurus zinc finger protein 75a (ZNF75A), mRNA. [Source:RefSeq mRNA;Acc:NM_001109965]
Coordinates
chr25:2750040-2752172:+
Coord C1 exon
chr25:2750040-2750235
Coord A exon
chr25:2750236-2751644
Coord C2 exon
chr25:2751645-2752172
Length
1409 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
GAGCTTGTTTCTGCTCTCAGTGC
3' ss Score
6.97
Exon sequences
Seq C1 exon
CTTGGCGCCAGGCGGCCAGCAGAAGAGGTAGAGCGGCTGGGTGGGCCTAAGTGGTTCCAGACCTGCGCCCCAGGACCCGCCTCTGAGTGGCGTGGAGCCGGGGGTTGTGCTCCTCAGAGCGGCGGTTAGACGCTTGGCGGCTTGCGGTTGAACCCCGGGAAGAGGGAACGGCTTCCACGAAGCCAGGCTGTCTGAG
Seq A exon
GTAACCTGGAAGCGGCTTCCCCTTCAGCGCCGGCTCCGGAGCCGCCGAGAGACGCCTGTCACTGCTCGCGGCCGCTGCAAGGCGGGTGGTCGGAGCCGGTCGGCCAAACTACCCCGGGCGAGGCCCGACGTCAGGTTCCTGAGGCCGCTCTGCACCCTTTGCGCGGGTGGCGCCCGGGCCCGCGCGGCTGAAACCCGCTCGGACACTGCCTGCAGGCCCAGTGCTCGCGGACGCGCCCCGAGTCGTGTCCACTTTCCCGCCTCCGCCGGCGTTTCCTATACTGGCTGATGTGACCGCGGGAGAAACGAGAGTCCTCCCCTCAGAGATCAGCCTCTGTGATGCAAAAGTTTGTTAAGTGTCCCCCGTGCCCCCTGAGCCGAGTGGGCATAGGGAGCCGGCCTTTTGTAGATACCGCGGCTTCCTGGGCAGAATTTCTGTGCCATTTCTGCTGGGTAACCTCAGGGAAAGTGAGATTCACGAGGCCTTGCTCAGAGGTCTAAATGACCCTTGGAAAAGCTGAAAGTAATCATCACCAGCTCACATGCTCTCCTTTTTTATCTGCTTGACATTTGGATAAACATTTTGTGAACAAGGGTCACCTGTAATTTTTCCTAGATCAAATTCAAAATACACGTATAAATCTTGTGCATAGTTTTCTTTACACGTCTTGCAAAGAAATGTCAAGAATGTTTTCAGTTAGTTGATTTCTTGTGGGCATCCCTTTTTTTTTTTTTTTTGCTGTACTTTGGGAAATATGAGATCTGAATTCTCTGACCAGGGATCAAACCCTTGCCCCCTGCACTGGAAGTGTGGATTCTTAATCACTGGACCCCCAGGAGACTCCCTTGGGAGATGCTTTTTTCAAGAAAATAAGGCTCCAGTTTTCCTAATTACTTTCCTTCTACTCTGGTCTCATAGTTTCAGCTCTCCTGGCAGTAATCACAATGGAAAGTAGCACCTCAAATGGTCCAGGAAGCGAAGGTTTCCATCTCAAGAGGATGAAGGGTAATACAAGTGTACCCACTTACCAAAGACAGAAGATTAGGATGATATGTTGACATTTTAAGAGAAACTCAGAATATTCTCCTAATCTTTTTTTGACATGGAGAGGATGGCATAAGAAGTGCATGAGTTAAATATTTGGATAATCCCAAAACTCGTGGGAGCCAGTGGGTACTAGGTTTTTCACTTGCTAACCTTTCCTGATTTATTTTTTTCTTTTGAGAAGGAGAAGTGACTTACTGGAATTTGTCTTTAATAAGCTGTGCTGTATTCAGTTGGTTAATAGAAAAGGAGCAAAACACAGGCCTGGCAGTTGATTTTTAAAGGTCATTTTTCTCATAATAAGTAGCAAGTAATAAAGTTCATGTGACAATATCTTACTGACGTGAGCTTGTTTCTGCTCTCAG
Seq C2 exon
TGCCTTAGGAAGAAGATCCTTTTATTGGTTTTATTCAAAACCAGATCGGGCTTCAGTTGTCAGAGGTAGCCGCTGGTGGGGTGTCTAATACAGGAGCAGAATTGTTCCTGGAGAAGAATGATGACAGTAGATCTGAAGGTGGCTGAGTTCTCGAACCCTCAGATCAGAGCTCTTTGGGAGACCAAAGGACCTGTGGCAGAGAACGCCAGTCAGCATAAGAAACATGCCCCACAGACGGACAGTCTCAGTCCTGAGAGGTCTCACCAGCACTTCCGGAACTTCCTCTATCATGAAGCAGCTGGACCCCGGGAGGTAGTTGACCAGCTTCAAGAATTATGCCGTCAGTGGCTGAGGCCAGAGATTCATTCAAAAGAGCAGATCTTGGAACTTGTGGTGCTAGAGCAGTTCCTGACCATTCTGCCCGGGGACACCCAGACTCTCTTAAAGAAGCAACATCCACAGAGCATCGAGGAGGCTGTGGTCCTGGTAGAACACTTGAAAAAGGAAACTGGCCAAACAAGGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040381:ENSBTAT00000053980:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCTAAGTGGTTCCAGAC
R:
CACAGGTCCTTTGGTCTCCCA
Band lengths:
350-1759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]