BtaINT0166095 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002445 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr4:113149751-113150543:+
Coord C1 exon
chr4:113149751-113149804
Coord A exon
chr4:113149805-113150171
Coord C2 exon
chr4:113150172-113150543
Length
367 bp
Sequences
Splice sites
5' ss Seq
CAGGCATGA
5' ss Score
1.7
3' ss Seq
CGGCCCCGAGATCAATGCAGACT
3' ss Score
-2.08
Exon sequences
Seq C1 exon
ATTTGTCACGTGGCCCAGTAGATCTGAGCCGGCCAAGTCACCTGCCAGGTCCAG
Seq A exon
GCATGAAGCATCTTACAGTCTAGGAGCCGTGAGGGCCTGCAGGGCTCATTGTCCTAGATCAGAGCTAAAATCATCAGAACTTTAGAGGGTTCCATGAGGCCAGCGTGTCTCAGGGTTAAGGATATGGGCCGGTCTTTGTCTCCTCTTCATTTTCCATCCATCTGTGTCCCCTGGTCTGAGCCCTGACCCCGGCTCCTGGTTTTGCAGCGTGGTTTATCTGCCCCAGGCATGAGCACTCTGGGGCCAGGGGCTCAGGGAAGGCGGTGTGGGCCGGCCTGGTGTATCTGGAGCCTGGCTTGGGTCGGGGGGTGGGCAGGGGGGTAGCCTGCTGGGGGGCGGGGTGTGGCCGGCCCCGAGATCAATGCAG
Seq C2 exon
ACTCCATTTGCCAGGGGGTGATGCTGTGGTCATCAAGACGGAAGCACCATCTGAGGACGAGATGACGCCAGAGCCGCCCTTCCCCGGGGCGTCCCCGAGCCGGGCCGCGTGTGGAATCCCCAAAGGGCCCAGGAGCAGGACCGGGGGTTCCAGCCGGCTTCACGCAGGGGGCGTCCCCCGGGCGCGGGCCGGGGACTCCCGGTCCACGGGGGCTGGGACCCAGCCACCCCGCGTCCTCCCGCGTCGGCAGGAGCGGGCCTTCCCCTGCCCTGACTGCGGCCAGAGCTTCCGCCTGAAGATCAACCTGACCATTCACCAGCGGAGCCACGTGGAGGAGGAGCACCGGGAGGCCCGGGGCGGCTCGCCCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002445:ENSBTAT00000003175:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.832
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=18.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGCCCAGTAGATCTGAG
R:
GTCAGGTTGATCTTCAGGCGG
Band lengths:
356-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]